Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1844 ATGGAACTCACCGATTCCCGCGACGAACTCAGAGATCCCAACTGCCAACAAGATTCTCGCTCTGTACTCCGAATCGACTTCAATGAGATTCCCTCTCCTTCTTTCACCGAACCCCAACCGAACTCCATCGAGGTCGTACTCGTACGGACTTCCCACGAGAACCCCGCGCTTCCCCCGGCGGCATTCCTGCCGATGTTCAGGGCTCTGCTTGTGGTGCCTGTGCTCGACGAATGGGTTTGTGGAGATTGTGTCTCTGGTGGGGTCATGAGTAAGCGCTGGCCATTGGGAGTCAAGTCTAAGCCGCTTTTGGATATGAATGCTTCGCCACCCAGCGATATAGTCGGAGAAACTTATTTCCTTGCATACTTTGGAAAAACGTTCGCAAGTCAATATGGTACTAATGCAATCGGAATGGAATATGCAAGATGTCATTATCCATGTGGTGGACATTCTGTTTCAAACCAGCATGAATTAAGTGATGGAAAGAGACTTAACTCGAATAAGAATGCAAATAATATTGACAATGGCAAAACATATGGTTACCTATACATGGCATGCTTCCCTTGGTCATTTCATTTTTCCATTGATCCACTGCCACGTGCTTCCCTAGTCACTGGTACCACTGCCTTCTTGGCAGTAGCCATCACCACTATTGCTGATCATGATAGTCATTCCCATGTATGCATATTAAGCAGCTCAAAACAGAATGCTTTTGTGGCTACTTATGCTGTTCACATTCTGCTCTTGCTATTGTGCTCCTCTGTTTCTGCTTCTTTTTTGCAAGCTCTTTTGCTTAAACGCGGGTTGCTTAGTGTGTCGCTGAATGCAGGACCACGTTTGGTTCCCATCCTCTCCAAAATCACCCATCAACTGTGGAACAATGTTCGTATTACATATGGGGATCAACATGATATAATTGAACTGGCTGAAAAATTGTCCCCGAATTTTGAATTGTTGGACAGTAAGGAGGTTCGCTACTTGTTCTGTAAAGTATGTGGCATTGCTAGGGATGATGACAGTGTTCTACTATGTGATACTTGTGATGCTGATTATCATACTTATTGCTTAAATCCTCCACTTGCTAGGATCCCTAAAGGAAACTGGTTCTGCCCTTCCTGTGTTGGCAGCAAATACTGTTCAAGATTTTTCAGAAGTTGTCAGTCACCCAGTTGTAATGGAAGAGAAAGAATACTGGAAGTACAGTATGGGCAAGCTGGCCACTGGGCCATTTTCAGCTGTATTTTGGCTCGGCTAGGTAAATGTTTGGTTCAGCCACATACTGCAAGCCACAGTCCAAACAATTTCAGGGTATTTGCTGATAGTTTGCCTTCAGAAGAGATTCATAAAGAGAAGAATATGTTCAACAGTGTTAATAAAAACGTATATTTTCAGTGTATTGATATATCCAATAAACCTTTTCCATCATCAAATCATATGCCTCAAAAAATCAATGGCTCTGGCGGAGCAGCTTATATCCAGGATAACCAGCAGAAATGTGAGGGAAGGGATATATCTTGTGAGATTGCTGCAAGTCAGAAATCTACTACCTTGAATTCATTGCCATCAAGCTTGATATTTCACTACGGCAGGAATCAATAA 1599 0.4334 MELTDSRDELRDPNCQQDSRSVLRIDFNEIPSPSFTEPQPNSIEVVLVRTSHENPALPPAAFLPMFRALLVVPVLDEWVCGDCVSGGVMSKRWPLGVKSKPLLDMNASPPSDIVGETYFLAYFGKTFASQYGTNAIGMEYARCHYPCGGHSVSNQHELSDGKRLNSNKNANNIDNGKTYGYLYMACFPWSFHFSIDPLPRASLVTGTTAFLAVAITTIADHDSHSHVCILSSSKQNAFVATYAVHILLLLLCSSVSASFLQALLLKRGLLSVSLNAGPRLVPILSKITHQLWNNVRITYGDQHDIIELAEKLSPNFELLDSKEVRYLFCKVCGIARDDDSVLLCDTCDADYHTYCLNPPLARIPKGNWFCPSCVGSKYCSRFFRSCQSPSCNGRERILEVQYGQAGHWAIFSCILARLGKCLVQPHTASHSPNNFRVFADSLPSEEIHKEKNMFNSVNKNVYFQCIDISNKPFPSSNHMPQKINGSGGAAYIQDNQQKCEGRDISCEIAASQKSTTLNSLPSSLIFHYGRNQ 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1844 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 383 IPR013083 -
Glsi12g1844 532 ProSitePatterns Zinc finger PHD-type signature. 329 373 IPR019786 -
Glsi12g1844 532 SMART PHD_3 328 374 IPR001965 -
Glsi12g1844 532 PANTHER OS02G0192300 PROTEIN 15 154 - -
Glsi12g1844 532 ProSiteProfiles Zinc finger PHD-type profile. 326 376 IPR019787 -
Glsi12g1844 532 Pfam PHD-finger 328 374 IPR019787 -
Glsi12g1844 532 CDD PHD1_Lid2p_like 329 373 - -
Glsi12g1844 532 SUPERFAMILY FYVE/PHD zinc finger 316 380 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1844 Glsi-ChrGlsi12 34355224 34360754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1844 290 377 C2H2 Transcription Factor Family AT3G01460 43.307 1.08e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi12g1844 PHD 1.3e-12 CL0390