Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1841 ATGCATAAACTCCCAATGGATTCTTGGAATTGGAATAGAACTTATTCTCCAAAATCTATCTTGGTTGTTTGCATCTTCATCCTCATCACCACTAAGTTTGCAGCTTCTTCGGCTTCGCAGACAGGTTGCACTCTTAAAATTCCGTTTTCACCATTGTTGAATGATTCAAAATGCCAAAAGGGAGACTGGGATGGTTTCCTACACCATAACTGCTGTGGGGCGGCATTTGATGCTTACCTTTATGCACTGGGTCAACGGGCAAATGAAACGGGGAAGATTTTCTTAAATTCTACAGAGCAAAGAATTTGTCTTTCTGGAATGAAGATGTTTAAGGATGATGTTTTTGGGTGTGGGATTGAGAAGCTAACAAGTGGTGCTGTTGGATGTTCTGACTTCTCGGTTGCTGATGTTCGGAATAGATTAGGAGAAGAGCTTGCAAGTTTAGATGAAAGCTGTCAGCTTAAGGACAAGCTGGGGCTATCATGTCCTTCCTGCCTGATTACGTGGAAAGCCATAAAAGGAGCATATTCCAGAAACACCCATAAGGAACCAGCAAAAGTTGAATCTGATCTCTGTAGAATTGCTGTACTGGTGTCATTTATAAGCAGCAAAATTGAAAATAAGATGTACGTCCATGCACTTCAGAGATGCCTTGGAGGAGCTGATTTTTATGGAGGTACATGGATTCTGACTGGAGCAATCATAGCAGTTGCGTTGTTAATAGCTATCACTGCATACATCTTGTTACGTAGATATTTCAAATCAGTCCCACCAAAAAATGAAGCACTGGGGGATGTTCTACTGAAGGAAACTGCTTGTCCAAGAGTTCCTCTCGAGGAAGTGTACGAGGCCACAAACCATTTAAATGAAATGAATGTCATTGGGGAAGGAACTTCCGGAAAGGTCTATAAAGCCACAATGACAAATAAACAGCATGTTGCAATAAAGCACATAATCAATGATGAAGGAAACATGGAGACTTTTGTGAGGGAAGTTACAAGCTTATCGCAAGTCAGACACCCAAATCTTGTTGCTTTGCTGGGTTGCTGTGTAGAGGGAGATGAATGCTTCCTTGTCTATGAACTGTGCCCCAACGGGAACCTTTCAGAGTGGCTATTTGGCAAGGACAGAGCCCTGTCCTGGATAAAGAGGCTTGAGATTGCGATTGATAGTGCTAAAGGTCTTTGGTTTCTACATACATATCCTGGAGGCTGCATCGTTCACCGTGATATCAAGCCAACAAACATTCTCCTGGGGCCTAAGTTTGAAGCAAAGCTATCAGATTTTGGACTATCTAAAATTATTGAGGTGGGGGAAACCTATGTTAGCTCAGAAGTGAGGGGAACTTTTGGATATGTTGATCCTGAGTACCAAAGCAACCGCCATGTAAATTCGTCTGGCGACGTATATAGCTTTGGCATGGTACTTCTACAGATCCTCTCGGGGAAGAAGGTTATAAATTTGAAACTAAGGAAACCAATGTCGCTGTATAAAAGGGCAAAAGCTCTCACAAGGAGTGGCAGCATAACAGAATTTGCTGATCCTAAACTTCAAGGGGAGTACTCAGAGGAAGCATTTGATTTTACCCTTCATCTGGCTCTGTCATGCACGGCCCTTAACCAACTACGTCCATCCATGGAGCAGGTTGTCAAAAGATTAGAAGAGGCTTTGTTAATTTCAACAACTAGAAATGTTTCTGCTGTAGAAACTTCAGTGGACAATCCCCCTATTCCATAA 1737 0.4231 MHKLPMDSWNWNRTYSPKSILVVCIFILITTKFAASSASQTGCTLKIPFSPLLNDSKCQKGDWDGFLHHNCCGAAFDAYLYALGQRANETGKIFLNSTEQRICLSGMKMFKDDVFGCGIEKLTSGAVGCSDFSVADVRNRLGEELASLDESCQLKDKLGLSCPSCLITWKAIKGAYSRNTHKEPAKVESDLCRIAVLVSFISSKIENKMYVHALQRCLGGADFYGGTWILTGAIIAVALLIAITAYILLRRYFKSVPPKNEALGDVLLKETACPRVPLEEVYEATNHLNEMNVIGEGTSGKVYKATMTNKQHVAIKHIINDEGNMETFVREVTSLSQVRHPNLVALLGCCVEGDECFLVYELCPNGNLSEWLFGKDRALSWIKRLEIAIDSAKGLWFLHTYPGGCIVHRDIKPTNILLGPKFEAKLSDFGLSKIIEVGETYVSSEVRGTFGYVDPEYQSNRHVNSSGDVYSFGMVLLQILSGKKVINLKLRKPMSLYKRAKALTRSGSITEFADPKLQGEYSEEAFDFTLHLALSCTALNQLRPSMEQVVKRLEEALLISTTRNVSAVETSVDNPPIP 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1841 578 Pfam SPARK 38 174 IPR043891 -
Glsi12g1841 578 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Glsi12g1841 578 ProSiteProfiles Protein kinase domain profile. 288 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1841 578 Gene3D Phosphorylase Kinase; domain 1 254 362 - -
Glsi12g1841 578 SUPERFAMILY Protein kinase-like (PK-like) 270 554 IPR011009 -
Glsi12g1841 578 FunFam probable receptor-like protein kinase At5g59700 363 572 - -
Glsi12g1841 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Glsi12g1841 578 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 200 555 - -
Glsi12g1841 578 Gene3D Transferase(Phosphotransferase) domain 1 363 571 - -
Glsi12g1841 578 Pfam Protein kinase domain 290 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1841 578 SMART serkin_6 288 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1841 Glsi-ChrGlsi12 34332031 34334839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1841 232 554 Receptor kinase-like Gene Family AT1G07650 39.577 2.32e-61 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Glsi12g1841 Pkinase 1.1e-41 CL0016