Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1840 ATGGCTACTCGAATTCTTTCCTCGCTGCGTTCTGTCACATCTTCTTCTGCCTCTGCTTTCAAACATCGTTTGGGCCTATATTGTTGCTGGGTTAGAGGTATCAGCGGAATTGGTGAATCTGCTGCTGTTGAGGAGCCAATTATACCCGCCGTTCAGATAGATCATACTCAGCTTCTCATTGACGGACAATTTGTTGATGCTGCTTCCGGAAAAACTTTCCCAACCTTCGATCCTAGGACTGGAGATATAATTGCCAACGTGGCTGAAGGTGACAGAGAAGATGTAGATCGCGCTGTCTCTTCTGCTCGGAAGGCCTTTGATGAGGGACCATGGCCAAAGATGACAGCTTATGAAAGGTCACGTATAATTCTGCGCTTTGCTGATTTACTGGAAAAACACAACGATGAAGTTGCAGCACTTGAAACATGGGATAGTGGGAAGCCTTATGAACAGGCCGCAAATGTTGAAATACCTATGGTGACACGCCTGTTTCGATATTATGCTGGTTGGGCAGATAAAATTCATGGTCTTACTGTTCCAGCTGATGGACCACACCATGTCCAAACCTTGCATGAACCCATTGGGGTAACAGGGCAAATTATTCCATGGAATTTCCCTCTTGTTATATATTCATGGAAGGTTGGGCCTGCCTTAGCTTGTGGTAATACAGTTGTACTGAAAACTGCAGAGCAGACACCTCTCTCTGCCCTTTATGTCTCAAAGCTATTTCTCGAGGCTGGACTTCCTCCTGGTGTTCTAAATGTTATCTCTGGCTTTGGTCCTACTGCTGGTGCAGCTCTATGTAGTCATATGAACGTTGACAAGCTTGCTTTTACAGGATCCAGTAGCACTGGTAAGATTGTACTGGGACTGGCTGCACAAAGCAATCTGAAGCCAGTGACTCTGGAGCTGGGGGGAAAGTCTCCCTTCATTGTGTGCCAGGATGCTGACATTGATGCAGCCGTGGAAGCTGCACACTCTGCTCTGTTCTTTAATCAGGGCCAATGTTGTTGTGCCGGTTCTCGCACATTCGTACATGAAAGCATATATGATGAGTTTGTGGAAAAAGCAAAAGCCCGTTCCCTTAAGCGTATCGTTGGAGATCCTTTCAAAAGTGGGGTTGAGCAAGGTCCTCAGATTGATTCAACGCAATTCGAGAGGATCCTCCAATACATAAGATCAGGCGTTGAAAGTGGTGCTACTCTTGAAGCTGGTGGTCAAAGATTTGGCTCCAAAGGCTACTACATCCAGCCCACTGTTTTCTCAAATGTTCAGGACAACATGCTGATAGCTAAAGAAGAGATCTTTGGTCCGGTGCAGACTATCTTGAAATTCAAGGATCTTGAGGAGGTCATAAGAAGAGCAAATGCAACATCCTATGGGCTGGCTGCCGGTGTTTTTACTCAGAATATAGACTCTGCCAACACTTTGATGCGTGCATTGCGAGTTGGAACAGTATGGATCAACTGCTATGATATATTTGATGCAGCAATACCTTTCGGTGGGTATAAGATGAGTGGACAAGGGAGAGTAAGGGGAATCTACAGCCTTAGCAACTACCTCCAAGTCAAGGCTGTTGTTACTCCTTTGAAAAATCCGGCATGGTTGTAG 1611 0.4575 MATRILSSLRSVTSSSASAFKHRLGLYCCWVRGISGIGESAAVEEPIIPAVQIDHTQLLIDGQFVDAASGKTFPTFDPRTGDIIANVAEGDREDVDRAVSSARKAFDEGPWPKMTAYERSRIILRFADLLEKHNDEVAALETWDSGKPYEQAANVEIPMVTRLFRYYAGWADKIHGLTVPADGPHHVQTLHEPIGVTGQIIPWNFPLVIYSWKVGPALACGNTVVLKTAEQTPLSALYVSKLFLEAGLPPGVLNVISGFGPTAGAALCSHMNVDKLAFTGSSSTGKIVLGLAAQSNLKPVTLELGGKSPFIVCQDADIDAAVEAAHSALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARSLKRIVGDPFKSGVEQGPQIDSTQFERILQYIRSGVESGATLEAGGQRFGSKGYYIQPTVFSNVQDNMLIAKEEIFGPVQTILKFKDLEEVIRRANATSYGLAAGVFTQNIDSANTLMRALRVGTVWINCYDIFDAAIPFGGYKMSGQGRVRGIYSLSNYLQVKAVVTPLKNPAWL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1840 536 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 302 309 IPR029510 GO:0016491
Glsi12g1840 536 FunFam Mitochondrial aldehyde dehydrogenase 2 308 497 - -
Glsi12g1840 536 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 60 524 IPR016162 GO:0016491
Glsi12g1840 536 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 41 526 - -
Glsi12g1840 536 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 60 316 - -
Glsi12g1840 536 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 306 495 IPR016163 GO:0016620
Glsi12g1840 536 Pfam Aldehyde dehydrogenase family 64 526 IPR015590 GO:0016491
Glsi12g1840 536 SUPERFAMILY ALDH-like 52 530 IPR016161 GO:0016491
Glsi12g1840 536 CDD ALDH_F2BC 53 528 - -
Glsi12g1840 536 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 330 341 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1840 Glsi-ChrGlsi12 34328372 34331494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1840 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 72.862 0.0 848