Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1834 ATGTTTTATGGGTCTGCCTTTATGATCTGTGGGATGTCAGAAAGCATGTGTCATAAGTGGTTTTTTGATCATACCCACTTGAAGATGTATTGGATTCGACATCAAATCCAACAAAAAGAAGGTTACTTGAGCTACCAACCACCGGTTTTGCCTTCATCTTCATCCTCATACCCTGGTGCTTTCCACGAAGACACTGTGTCTTCATCATCATCGCCTTCCTCATCTGGTACTAGAATTAGTCCGGCTGTTCTTTTCATTATAGTGATACTAGCCGTACTATTCTTCATTTCTGGTCTGCTCCACCTGCTTGTCAGATTTCTCATAAAGCACCCCTCATCCTCAGCAACTGCTGAATCTAATAGACACCGGGAAATTTCAAGCTCGGATGCTCTTCAAACACAACTGCAACAGCTTTTCCATCTTCATGACTCTGGTCTGGATCAAGCTTTCATTGATGCACTTCCTGTTTTCCAGTATAAAGAGATAGGGGATCTGAAAGAACCATTTGACTGTGCTGTTTGTCTGTGTGAGTTTTCTGAAAGGGACAAGCTCAGGTTGCTCCCAGTGTGTAGTCATGCTTTTCATATCAATTGTATAGACACTTGGCTTCTATCAAATTCCACATGTCCGCTTTGTAGAGGAACCCTCTTTACTCCAGGCTTTTCAATTGAAAACTCAATATTTGATTTTGATGATTTAAGGGAAGAGGATGGATGCCCCTGTAATGGAGAAAATGGATTCACTATTAGACAAAAAAAAGTGGAAAAGGAAGAAACTGTAGAGAAAGGGGTCTTCCCTGTAAAACTTGGTAAATTCAGAAGGCTGAATGTGGAGGCAGGGGAGACTGGAGGAGGAGAGACTAGTAGCAGTAATTTAGATACAAGAAGATGTTACTCAATGGGGTCATACCAGTATGTGCTTGGCAATTCTGACCTCCGAATTACCCTGAGCCATGACGGACAAGGTCGTGATACAAGGATCACAAAAGTACCAGAGCACTCAGAGAAGTTTTCAATGGAGGAAGCAAAGAACATCAGAAATGTGAGTAAAGGTGAGAGCTACTCTGTTTCCAAAATTTGGCAGTGGTCGAAAAACGGCAAATTTTCTAGTTCTTCGGATGTTCAAATGGGCATGCCATCTACTCTTCATACAGACTTGCCATGGATGAGGAAAACAGAAGGTGCAGGAAAGGTATCCACGTAA 1203 0.4214 MFYGSAFMICGMSESMCHKWFFDHTHLKMYWIRHQIQQKEGYLSYQPPVLPSSSSSYPGAFHEDTVSSSSSPSSSGTRISPAVLFIIVILAVLFFISGLLHLLVRFLIKHPSSSATAESNRHREISSSDALQTQLQQLFHLHDSGLDQAFIDALPVFQYKEIGDLKEPFDCAVCLCEFSERDKLRLLPVCSHAFHINCIDTWLLSNSTCPLCRGTLFTPGFSIENSIFDFDDLREEDGCPCNGENGFTIRQKKVEKEETVEKGVFPVKLGKFRRLNVEAGETGGGETSSSNLDTRRCYSMGSYQYVLGNSDLRITLSHDGQGRDTRITKVPEHSEKFSMEEAKNIRNVSKGESYSVSKIWQWSKNGKFSSSSDVQMGMPSTLHTDLPWMRKTEGAGKVST 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1834 400 Pfam Ring finger domain 170 213 IPR001841 -
Glsi12g1834 400 FunFam RING-H2 finger protein ATL46 133 218 - -
Glsi12g1834 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 74 360 - -
Glsi12g1834 400 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Glsi12g1834 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 218 IPR013083 -
Glsi12g1834 400 SUPERFAMILY RING/U-box 151 219 - -
Glsi12g1834 400 CDD RING-H2_EL5-like 170 213 - -
Glsi12g1834 400 SMART ring_2 171 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1834 Glsi-ChrGlsi12 34296791 34297993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1834 68 372 C3H Transcription Factor Family AT2G18650 42.566 2.39e-56 189