Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1833 ATGAAACGATTTCCTGTGTGGGTAGTCCTCATTCCATTTCTTTTCCTCCTTAACATGACTAACTCTGTGGAGGATGAGGTAAAGAGCACAATGATAAGCTTCCTTGCGAAACTTTCTGATGATAGTGTCCACAATAATTCTGCTTTGGTTTGGAAGCCAGACTCTGATCCCTGCAAGGATCTCTGGCAAGGTGTAATCTGTGATATTCGAAATATATCCGTAAGGAAGTTACTTCTTGACAGGTCCAATTTAGCTGGAACTCTTGATGCTGCTATGCTTTGTAACTTGCAGCCCCTTGCTGCTTCCCTTACCATTCTTAGTCTTAATGGCAACAGTATCAGAGGAGGAATAGCCGCTGAGATTGGAAACTGCAAACATCTCGCTCGCTTGCATGTAAGTGGAAACCAACTTTCAGGAAACCTTCCTGGTTCACTTGCCATGTTGAATAATTTGAAAAGACTAGACATTTCGAACAACAAGTTTTCGGGTCACTTGCCAGACTTGTCCAGGATCTCAGGCCTGAATGTTTTCCTTGCCCAAAACAATCGGCTTAGCGGGGAGATACCCGGATTTGATTTCTCCAATCTTAACTACTTCAACGTTTCCTTTAACAATTTCGGTGGCCGTATTCCAGATGTGCGTGGCCATTTCTCTGCAAATAGCTTCTTTGGTAATCCTGAACTGTGTGGAGATCCATTGCCAAAAAACTGTTCAGCTCTGGCCATTGAGGAGAGATCGCAAGAATCAAAGGGATCAAAAGATCCTTTTAAAGACCAGATTCTAATGTATTCAGGCTATGCTGCATTGGGTTTAGTCTGCATCCTCTTTATAGTATTTCAACTGTGTAAAAGAAAGAGGACAGAAAAGAAAGTGGAAGCAGTAAATGAGGTAGCAGCAACGGATGATGCTATCGACAAACCTAGCAATGTTTCAAGTGAATCCAAAGCAACTATAAGCAGATCTGAGTTTTCAGTCACCTCTGAGAGTGGGATGGTTTCACAATCACTTATAGTTCTTACACAGCCGGTGGTAAATGAATTGAAACTTGAGGACTTGCTGAGGGCCCCTGCCGAATTGCTTGGCAGAGGAAAGTATGGTAGTCTTTATAAGGTGATGCTTGACAATGGGAAGATGGTGGCTGTAAAAAGGGTCAAGGACTTGACTATTTCCAGCCATGACTTCAAGCAAAGAATGGAAACTCTGGGGCAAGTGAAGCACTCTCATGTACTCTCACCACTTGCTTTCTATTGTTCCGCACAAGAGAAGCTCTTGGTCTATGAGTTTCTGGAGAATGGAAGTCTATTCAAGCTTCTACATGGTGCCTTGGATTGGACTAGCAGACTTGGAATTGCGGCTTCGGTTGCTGAGGGATTAGCTTTCATGCATCAAGAGCTTGGCGAAGATGGTATTGCACATGGTAACTTGAAATCCTCCAACATTTTGCTAAACTATAATATGGAGCCACGCATAAGCGAGTACGGTGTTATGGTTATGGAAGATCAACACAGCTTGTCTTTTGCCAGTCCTCATACTGCTGGTGCACCAAATGTCTTCAAGGCTGATGTTTATGGCTTTGGTGTTATTCTTCTTGAACTACTTACTGGAAAGTTAGTGAAGAACAATGGGGTTGACTTGACAGAATGGGTTCAGTCAGTCGTAAGGGAAGAATGGACAGTTGAAGTCTTTGACAAGTCGTTAATATCAGAGTTTGCAAGTGAAGAGAGGATGGTGAATTTGCTTCAGGTGGCTATAAAATGTGTTCATCGCTCTCCAGAGGCTAGGCCAAGTATGAACCAAGTTGCTCTCATGATTAACACTATAAAAGAGGAAGAAGAAAAATCCTTGATCTATGAACTGTTGCTGATGTGCTCCAAGACTCCAAGTTTAGCATTGCTTTTCCTACCTTTCAATGTTCCCATTTTTGGTCAGAAATCTGATTAA 1941 0.425 MKRFPVWVVLIPFLFLLNMTNSVEDEVKSTMISFLAKLSDDSVHNNSALVWKPDSDPCKDLWQGVICDIRNISVRKLLLDRSNLAGTLDAAMLCNLQPLAASLTILSLNGNSIRGGIAAEIGNCKHLARLHVSGNQLSGNLPGSLAMLNNLKRLDISNNKFSGHLPDLSRISGLNVFLAQNNRLSGEIPGFDFSNLNYFNVSFNNFGGRIPDVRGHFSANSFFGNPELCGDPLPKNCSALAIEERSQESKGSKDPFKDQILMYSGYAALGLVCILFIVFQLCKRKRTEKKVEAVNEVAATDDAIDKPSNVSSESKATISRSEFSVTSESGMVSQSLIVLTQPVVNELKLEDLLRAPAELLGRGKYGSLYKVMLDNGKMVAVKRVKDLTISSHDFKQRMETLGQVKHSHVLSPLAFYCSAQEKLLVYEFLENGSLFKLLHGALDWTSRLGIAASVAEGLAFMHQELGEDGIAHGNLKSSNILLNYNMEPRISEYGVMVMEDQHSLSFASPHTAGAPNVFKADVYGFGVILLELLTGKLVKNNGVDLTEWVQSVVREEWTVEVFDKSLISEFASEERMVNLLQVAIKCVHRSPEARPSMNQVALMINTIKEEEEKSLIYELLLMCSKTPSLALLFLPFNVPIFGQKSD 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1833 646 SUPERFAMILY L domain-like 38 217 - -
Glsi12g1833 646 Gene3D Ribonuclease Inhibitor 192 239 IPR032675 -
Glsi12g1833 646 Gene3D Ribonuclease Inhibitor 24 191 IPR032675 -
Glsi12g1833 646 Gene3D Transferase(Phosphotransferase) domain 1 429 620 - -
Glsi12g1833 646 Gene3D Phosphorylase Kinase; domain 1 321 428 - -
Glsi12g1833 646 ProSiteProfiles Protein kinase domain profile. 354 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1833 646 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 90 188 - -
Glsi12g1833 646 Pfam Protein kinase domain 358 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1833 646 SUPERFAMILY Protein kinase-like (PK-like) 357 603 IPR011009 -
Glsi12g1833 646 PANTHER OS05G0588300 PROTEIN 7 609 - -
Glsi12g1833 646 ProSiteProfiles Leucine-rich repeat profile. 150 172 IPR001611 GO:0005515
Glsi12g1833 646 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1833 Glsi-ChrGlsi12 34293190 34295476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1833 30 608 Receptor kinase-like Gene Family AT1G68400 36.177 8.03e-100 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi12g1833 Pkinase 6e-26 CL0016