Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1829 ATGTGGCTACAGGATCGGCTCAACAGTGTTCGAGAGGAACTGGGTTTCTCATCGGGTCAAGAAGGTGGAATTCTATTGGAATTGATGTTTCTTTTCAAAGAGGAAGTTGGGATCGATTCAGAATTCAAGGGAGATGGAGGGCTATGCATGGGTCGGGAGGATGGACGCAAGATTCGTGTTGGTGATTGTGCACTTTTTAAGCCACCCCAAGATTCCCCACCTTTTATTGGAATAATTCGCAAATTAACATTGAAGAAAGAGGGAAGTCCAAGTTTAGAAGTGAATTGGCTTTACCGACCTGCTGATCTGAAGCTTGCTAAAGGGATCCTACTGGAAGCTGCACCAAACGAGGTCTTCTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTTGCATTCCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTAGACGAGTGTATGACATTGAGAGCAGGCGTTTATGGTGGCTAACTGATAAGGACTACATTAATGAACGACAGGAAGAAGTTGACCAGCTATTAGACAAGACAAGACTAGAAATGCATGGGGCAGTGCAGTCAGGAGGCCGTTCTCCTAAACCCTTGAATGGTCCAACATCAACACCATCACTGAAATCTGGTTCTGATAGTGTTCAAAATAGTGCTTCCATTGGTTCACAGGGTAAGGGAAAGAAGAGAGAACGGGGTGATCAGGGATCTGATTCATCTAAAAGGGAGCGATTGAGTAAAACAGAAGATGGTGATACTGGTCAATTTAGGCCAGAAAGCATGTTAAAGTCTGAGATTGCAAAAATTACTGATAAAGGTGGTCTTGTGGACTTTGAAGGAGTTGAAAGACTGGTACAGCTCATGCAACCTGACAGTGCTGAGAAAAAGATAGATTTGGCTGGGCGAATAATGCTTGCTGATGTAATAGCAGTCACAGATCGATTTGACTGTCTTGGTTGGTTTGTACAGCTCAGGGGATTGCCTGTATTGGATGAATGGCTTCAGGAGGTCCATAAGGGGAAAATTGGTGATGGTAGTATGCCTAAAGAAAGTGACAAGTCTGTTGAAGAATTACTGTTAGCTCTACTCCGTGCATTGGATAAGCTTCCTGTGAACCTTCACGCATTACAGACCTGTAATGTTGGAAAGTCTGTCAATCACTTACGTACTCACAAAAATTCTGAAATTCAGAAGAAAGCTAGGAGTTTAGTAGACACATGGAAGAAACGTGTTGAAGCTGAGATGAATATTAGTGATTCAAAATCTGGTTCTAACCGTGGTGTTTCTTGGCCAGCAAAGCCAGCACCTTCTGAGACATCTCATGTTGGAAGTAGGAAAACAGGAGGATCTGCTGAGACTGCTGTTAAGAGCTCTGCCATGCAACCATCGGCATCTAAAATTTCCCAAGTTAAGATTAGCACAGGAGAAGCATTGTACAAGCCCTCCCCATCTTCCAGTTCAACTAAATCAATGACTACCTCTGTGAGCAGTAATTCAAAGGATCAAAACTTAAAATTTTTGGCTGGAGCTGGAACATCAGATCTACCCCTTACGCCTATTAAGGAGGAAAAGAGCAGCAGTTCTAGTCAGTCTCAAAACAACAGCTTATCTTGTTCTAGTGAGCAAGCAAAAACTATTGGTTCTTGTAGGGAAGATTCAAGGAGCTCCACTGCTGTGTCAATGAGTGTGAGCAAAATTCCTGGTAGTGCATCTCGCCCTCGGAAATCAAGCAATGGTATGCATGGATCCGCTTTAACTGTTGTTCAGAAGGAGCCTATATCTGGAAAAAACTCAAGTAGAAATTCACCTTCTGAGAAGGCGTCACCAACTCAAGCATCCCATGAAAAATTACCAGATGTGCCCCTCTCTGATCACGGGAATAATCAGCGTTTAATTGTGAGGTTGCCAAATGCTGGTCGCAGTCCTGCTAGGGGAGTTATTGGGGGCTCTTCTGAAGATCCTACCATTCTATCTGGCAAAGCTTCACCTCCTGGAGATAAGCATGAGAATCTGGATAGAAGAGTGAAAGCCAAAACTGATGATTTTCAGATTAATAATGTGTCAAATTTGGCCACTGATGTGTGTGATACCAACGAATCTCTGACTGGTTACGAGGAAGGTAATGCCTCACCAGTGGGTGAAGGATGCAGGGCCAGCGAAGATGGTGATAAAGTGGCAGAAACGTCAAAACCAACTAGTTCATCTGGATTTCTTTCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGCTCCATAAACGCATTAATTGAAAGCTGCGTGAAATTTTCCGAAGCAAGTCCCTCTGTATCCCCTGGAGATGATGCTGGAATGAACCTTCTAGCTACTGTGGCTGCTGGGGAAATGTCCAGATCCGAAAATGTGTCACCGGTGGTTTCTCCTGGGAGGAAGTCTCCTGTGGCAGATGAATCATGCTCAGGCAATGATGATAAGTTACAACATTCCAGGGAAGCAGTTACTCACTCACTTGAGCAGTCTAATGGAGGGGCTACTGGGGAGCATGTGAAAAATGTTGATACATTGCAGTGCAAGAGCTCGTGTGATTTGTCTGGAGATGTGGAAGCCACTCCATCTGGTTGTATAGAGAAAATTGGTGATGGTAGAAATCAAATGAATTCTTCCCCTACAGATTTGTCACATAATGCTGAAGGCCTATGCGTAAGGCCTGAAACCAAAGAGGATGCTCCTGAAACTTTATTGTCTGCTAAAATGGAGAATCTTGCAGAGCCTGAAGGGATGAATTGGGTTCATGAACAGAGGAAATTAGAAACACATGGGGTTAAGAGCAACAATAGTTCAGATTCTAAATTAAAATCAACGATTTCTTTTGGTGATGACCAGAAGGCTGATCATGTGGATGAGGGAAACATGGAGAATGAAGTGTCAGTATCAGAGGGGGCTGCTGCAAGTCTAAAGATAGAGAAAGAAGCCTGTGAAAAATCTCCCGAATCAACTTCAGGTGTGGGTAATGAGAACCAGATTAGTGTGGAGAAAATGACAGGTTCTTTCATCTCAGAGCAAAAGCCATCTTCTCTTGCTGAAAACTGTGGGTCTATTGAGGGCAAAAATGAGAATGTTGTTGTTCCACCTGCTTCTAGTAACGCTTTGATGGAACCTAAGATGGAAGCTAAGTTTGAAATCGCTGATGGCATGAAGCCAGGCGAGGTAGAGCATAATAATGAAAGAGGAAGGGATCTGGGTAATAATCAATACACTGAAGAGAACTCGGATAGAAAAGAGGTTCTCGGTCTCTGTTCTGGCTCATCAGTTCACTCAGAGTCTCCAAAAAATGCTGTACAACAGAATGAAGTGCACAAAAAGCCTTCTGGGTTTAATTTGGACAGAGTTGCATCAGATGAAGCGGCTGAGCAGCATGCTACCGCAGGTTTGGATATAGCAGTAAAGCTGGACTTTGATTTGAATGAGGGATTTCCTGTTGATGATGTGAGTCAAGGGGAGTTTGTTAGACAGGAAGAACCTATCACGTCATCTGCAGTCCATATGCCTTGCGCATTGCCTTTTCCCATTTCTTCCATGTCTGGGGGCTTCCATGCTTCAATTACTGTGGCTTCTGCTGCCAAAGGGCCAGTTATTCTGCCGGAGAACCCATTGCGGAGTAAGGGGGAACTTGGATGGAAAGGATCAGCTGCAACTAGTGCATTTCGACCAGCTGAACCCAGGAAAAACATGGAGCCGCCATCAAGTACAGGTGATAACAGTGCTACCAAGCAAGGCCGCCCTCCTCTAGATTTTGATTTGAATGTGCCAGATCAAAGAAGTTTTGAGGATGTGGCTTCCCATGGCTCTTCATCAGAGACTTGTTTAGAATCTACCCCTCATGATCGTGGGACTGTGGGACTTGATCTTGATTTAAACAAAGTTGATGAGACTCCTGATTCTGGGTCTTTCTCCATGAGCAAACTGGATATTCCTTCTTTACCATCTAAGCCTTCGTTATCTGGTGGATTATCTAATGGTGGAAATGTCTCGAGAGATTTTGATTTAAATAATGGGCCTGGCCTTGATGAAGTTGGCACTGAAGCCCCAGCTCGTAGTCAGCAGATAAAAACTACTGTACCATTTCCATCAGCTGTTCATGGTGTAAGAACAAATAATGCTGAATTTGGGAATTATTCATCATGGTTTCCTTCGGGGACCTCCTATTCTGCAATCAATGTCCCACCACTTTTACCTGGTAGAGGAGAACATAGTTTTGTTGCTGGTGCTGGGGCCCAGCGGATTATGGGTCCGCCAGGTAGCGCGTCTTATGGTCCTGAAATCTACAGGGGTCCAGTGCTTTCATCCTCTCCAGCTGTTGCCTATCCGCCCAGTATGCCATTTCAGTATCCAGGATTTCCTTTTGAAACCAATTTTCCTCTGTCTTCAAATTCGTTTTCTGGCTGTTCTACAGCGTATATGGATTCCTCAACAGCAGGAGGACTTTGCTTTCCTACCATGCCTGCGCAGCTGGTTGGTCCTGGTGGTGTTGTCTCATCCACTTATCCCCGTCCTTGTGTTGTTGGTCTTCCAGGTAGTACAAGTAATGCTATACCTGAAAGTAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCAGGCCCTGGTGGTACAGATATAGAACGGAGAGATGAAAGATTGCCTCCAGGATTGAGGCAACTTTCTGTCTCAAGTTCACAGGCCTTGATGGAGGAACAGATGAAGATGTTTCAGGTGGCGGGAGGCGTATTGAAGAGAAAGGAACCTGATGGTGGTTGGGATGGAGAAATTGTGAGCCCCCTTCTTGTGGGAAATGTCAGAAATATTGGGGACGATTCAAGTGTTAAGCCAGTGATTAACAACGAGCAGATATGTTACCCTTACTGCTCGTGTGCCTCTTCATTTCTGACTGAAATTTATCTGGGCCTCTGA 4953 0.444 MWLQDRLNSVREELGFSSGQEGGILLELMFLFKEEVGIDSEFKGDGGLCMGREDGRKIRVGDCALFKPPQDSPPFIGIIRKLTLKKEGSPSLEVNWLYRPADLKLAKGILLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIESRRLWWLTDKDYINERQEEVDQLLDKTRLEMHGAVQSGGRSPKPLNGPTSTPSLKSGSDSVQNSASIGSQGKGKKRERGDQGSDSSKRERLSKTEDGDTGQFRPESMLKSEIAKITDKGGLVDFEGVERLVQLMQPDSAEKKIDLAGRIMLADVIAVTDRFDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGSMPKESDKSVEELLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNSEIQKKARSLVDTWKKRVEAEMNISDSKSGSNRGVSWPAKPAPSETSHVGSRKTGGSAETAVKSSAMQPSASKISQVKISTGEALYKPSPSSSSTKSMTTSVSSNSKDQNLKFLAGAGTSDLPLTPIKEEKSSSSSQSQNNSLSCSSEQAKTIGSCREDSRSSTAVSMSVSKIPGSASRPRKSSNGMHGSALTVVQKEPISGKNSSRNSPSEKASPTQASHEKLPDVPLSDHGNNQRLIVRLPNAGRSPARGVIGGSSEDPTILSGKASPPGDKHENLDRRVKAKTDDFQINNVSNLATDVCDTNESLTGYEEGNASPVGEGCRASEDGDKVAETSKPTSSSGFLSRSGQTYDASLSSINALIESCVKFSEASPSVSPGDDAGMNLLATVAAGEMSRSENVSPVVSPGRKSPVADESCSGNDDKLQHSREAVTHSLEQSNGGATGEHVKNVDTLQCKSSCDLSGDVEATPSGCIEKIGDGRNQMNSSPTDLSHNAEGLCVRPETKEDAPETLLSAKMENLAEPEGMNWVHEQRKLETHGVKSNNSSDSKLKSTISFGDDQKADHVDEGNMENEVSVSEGAAASLKIEKEACEKSPESTSGVGNENQISVEKMTGSFISEQKPSSLAENCGSIEGKNENVVVPPASSNALMEPKMEAKFEIADGMKPGEVEHNNERGRDLGNNQYTEENSDRKEVLGLCSGSSVHSESPKNAVQQNEVHKKPSGFNLDRVASDEAAEQHATAGLDIAVKLDFDLNEGFPVDDVSQGEFVRQEEPITSSAVHMPCALPFPISSMSGGFHASITVASAAKGPVILPENPLRSKGELGWKGSAATSAFRPAEPRKNMEPPSSTGDNSATKQGRPPLDFDLNVPDQRSFEDVASHGSSSETCLESTPHDRGTVGLDLDLNKVDETPDSGSFSMSKLDIPSLPSKPSLSGGLSNGGNVSRDFDLNNGPGLDEVGTEAPARSQQIKTTVPFPSAVHGVRTNNAEFGNYSSWFPSGTSYSAINVPPLLPGRGEHSFVAGAGAQRIMGPPGSASYGPEIYRGPVLSSSPAVAYPPSMPFQYPGFPFETNFPLSSNSFSGCSTAYMDSSTAGGLCFPTMPAQLVGPGGVVSSTYPRPCVVGLPGSTSNAIPESRKWGSQSLDLNSGPGGTDIERRDERLPPGLRQLSVSSSQALMEEQMKMFQVAGGVLKRKEPDGGWDGEIVSPLLVGNVRNIGDDSSVKPVINNEQICYPYCSCASSFLTEIYLGL 1650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 449 481 - -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 234 265 - -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 1278 1293 - -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 1102 1122 - -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 796 826 - -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 424 635 - -
Glsi12g1829 1650 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 53 1603 - -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 1214 1368 - -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 195 272 - -
Glsi12g1829 1650 Pfam BAH domain 57 165 IPR001025 GO:0003682
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 737 752 - -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 1531 1554 - -
Glsi12g1829 1650 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 325 434 IPR035441 -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 1068 1095 - -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 648 679 - -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 487 515 - -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 712 752 - -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 205 233 - -
Glsi12g1829 1650 ProSiteProfiles BAH domain profile. 56 171 IPR001025 GO:0003682
Glsi12g1829 1650 ProSiteProfiles TFIIS N-terminal domain profile. 337 423 IPR017923 -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 1531 1548 - -
Glsi12g1829 1650 Gene3D - 52 278 IPR043151 -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 1312 1347 - -
Glsi12g1829 1650 Pfam TFIIS helical bundle-like domain 371 420 IPR017923 -
Glsi12g1829 1650 SMART TFS2_5 343 422 IPR003617 GO:0005634
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 528 620 - -
Glsi12g1829 1650 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 288 424 IPR035441 -
Glsi12g1829 1650 MobiDBLite consensus disorder prediction 1068 1125 - -
Glsi12g1829 1650 CDD TFIIS_I 376 421 - -
Glsi12g1829 1650 SMART BAH_4 56 171 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1829 Glsi-ChrGlsi12 34264719 34274936 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Glsi12g1829 BAH 2e-10 No_clan