Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1819 ATGGAGTTTCAGGAGAGTGTTAAGTTCGTGGTGCACAAACCCAGTCAAAAGAAATGGGTTTCTCATAAAGGTACGGAAGCTGAAAATTTTGGGGAAGCCGTCACTCCCCGAAGAAAATGGAAGATCTTCTACAAATCATCATCGGCCATCCCTTCGAAACACTCAAAATCCCAAAAGAAACAGCCTCCGGAAGAGTTTCTTTGTCCCATATCCGAAACTCTCATGGCAGAACCAGTTATCGTCTCCTCGGGCCACACCTTCGAACGGCTGTATGTTGAAGCCTGTAAAAATTTAAGCTTTACCCCACTACTCTCCGATGGCTCCACACCCGATTTTTCTACAATAATTCCCAACCTCGCTCTTAAATCTGCAATTGCTAAATGGTGCCAGAACTCCTCCATGGTGCCTCCCGAGCCACCTAATGTCAACTCTGCTGAGAAGCTCGTTCATACACTAATGGCGACCCAGAAGCCACAATCTAATACCCGGAACAAAACAGATGCGCAAAAGGCTGTAGCCACAGAGAAGGAGCTGATTCAAGGGATGAAGGAAAACCCACCTGTGAATTTCAATCACGCAGCAACCGAGGTTACTCGACGCCCTAACCACTTCTACACGAGCTCAGAGGAATCGGTGGGAACCTCTGCTTCAACTCCTCCTCTGCAACTTTCAACTCGACCAAGCTGCTACTCTTCTCCGTCATCTTCTGAAATCGAAGTCATAACTCCTACCTCTCCTGAAGAAGAAGAAATCATGACGAAACTGAAAAGCCCTCAAGTTTTCGAGATCGAAGAGGCCGTGATTTCACTGAGAAAACTCACAAAAACCAGAGAGGACACTAGAGTCCATCTCTGCAGTCCTCGGTTACTCTCCGCCCTACGATCCTTAATCATCTCCAAGTACACTAATATTCAGGGGAACGCCGTTGCGGCTGTGGTGAATCTTACATTGGAGAAAGCGAACAAAGTGAAGATCGTACGGTCCGGAATCGTACCTCCGTTAATTGATGTATTGAAGGGGGGATTCCCAGACGCACAGGAACATGCTTCCGGTGCACTCTTCAGCTTGGCCCTCAACGACGATAACAAGACTGCGATTGGGGTGCTGGGTGCTCTGCCACCGTTGCTGCACTTGCTCCGGTCCGAGAGCGAGCGAACTCGGCACGACTCGGCGCTCGCCCTGTACCACCTCTCACTGGTACAGAGCAACCGAACCAAGTTGGTGAAACTCGGGTCGGTTCCGATTCTGATGGGCATGGTAAAGTCGGATCACATGAGGGGTCCGGTGTTGCTGATACTTTGCAGCCTGGCATCTTGTGGGGATGGGCGGGCGGCAATGTTGGATGCTGGTGCGGTGGAGTGCTTGGTGGGGTTGTTAAACGGGAGCGAGTTGAACTCCGGGTCGACTCGGGAGAGTTGTGTGGCGGTGCTGTATGCTTTGAGTCATGGCGGGTTGAGGTTCAAAGCGCTGGCGAAGGCGGCGGGGGCGGTGGAGGTGTTGAGGAAAGTGGAGAAAATGGGAAGCGAGAGAGCAAAGGAGAAGGTGAAGAGGATATTGGAGATGATGAGAGGGAAGGAGGAGGAAGAGGAGGATGTGGATTGGGAGGAGCTTCTCGACTCGGGGTTGGGTAGTCGGACTCGGGGTCGACACAGTAGTGGGTTGGGCGAGTCTACGTCCAACTCGTCCGAGTTTTGA 1695 0.5145 MEFQESVKFVVHKPSQKKWVSHKGTEAENFGEAVTPRRKWKIFYKSSSAIPSKHSKSQKKQPPEEFLCPISETLMAEPVIVSSGHTFERLYVEACKNLSFTPLLSDGSTPDFSTIIPNLALKSAIAKWCQNSSMVPPEPPNVNSAEKLVHTLMATQKPQSNTRNKTDAQKAVATEKELIQGMKENPPVNFNHAATEVTRRPNHFYTSSEESVGTSASTPPLQLSTRPSCYSSPSSSEIEVITPTSPEEEEIMTKLKSPQVFEIEEAVISLRKLTKTREDTRVHLCSPRLLSALRSLIISKYTNIQGNAVAAVVNLTLEKANKVKIVRSGIVPPLIDVLKGGFPDAQEHASGALFSLALNDDNKTAIGVLGALPPLLHLLRSESERTRHDSALALYHLSLVQSNRTKLVKLGSVPILMGMVKSDHMRGPVLLILCSLASCGDGRAAMLDAGAVECLVGLLNGSELNSGSTRESCVAVLYALSHGGLRFKALAKAAGAVEVLRKVEKMGSERAKEKVKRILEMMRGKEEEEEDVDWEELLDSGLGSRTRGRHSSGLGESTSNSSEF 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1819 564 Pfam U-box domain 63 131 IPR003613 GO:0004842|GO:0016567
Glsi12g1819 564 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 329 366 IPR000225 GO:0005515
Glsi12g1819 564 MobiDBLite consensus disorder prediction 206 247 - -
Glsi12g1819 564 SUPERFAMILY RING/U-box 53 138 - -
Glsi12g1819 564 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Glsi12g1819 564 MobiDBLite consensus disorder prediction 206 242 - -
Glsi12g1819 564 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 412 IPR000225 GO:0005515
Glsi12g1819 564 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Glsi12g1819 564 Pfam Armadillo/beta-catenin-like repeat 321 357 IPR000225 GO:0005515
Glsi12g1819 564 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Glsi12g1819 564 Gene3D - 245 521 IPR011989 -
Glsi12g1819 564 FunFam RING-type E3 ubiquitin transferase 246 522 - -
Glsi12g1819 564 SUPERFAMILY ARM repeat 253 522 IPR016024 -
Glsi12g1819 564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 135 IPR013083 -
Glsi12g1819 564 PANTHER U BOX DOMAIN-CONTAINING 49 523 - -
Glsi12g1819 564 SMART arm_5 400 438 IPR000225 GO:0005515
Glsi12g1819 564 SMART arm_5 277 317 IPR000225 GO:0005515
Glsi12g1819 564 SMART arm_5 318 358 IPR000225 GO:0005515
Glsi12g1819 564 SMART arm_5 359 399 IPR000225 GO:0005515
Glsi12g1819 564 SMART arm_5 439 482 IPR000225 GO:0005515
Glsi12g1819 564 MobiDBLite consensus disorder prediction 545 564 - -
Glsi12g1819 564 Coils Coil 508 528 - -
Glsi12g1819 564 MobiDBLite consensus disorder prediction 542 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1819 Glsi-ChrGlsi12 34212704 34214398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1819 59 564 U-box Gene Family AT5G40140 59.259 0.0 561