Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1817 ATGGCGGGTGGAACTGAAGCTTTCCCGGATTTAGGAAAACACTGCCAACATCACTATTGCAACCAACTCGATTTCCTCCCTTTCACATGCGACGGTTGCCGACAGGTTTTCTGTCTGGAACATAGATCTTACAAGTCCCACGATTGCCGCAAATCGGACCGTAACAGCAGGAAGGTTGTGGTATGCGAAACATGTTCGATGTCAATTGAGACCACCGGTCACAACGGGGAAGACGAGAAGGCAATCTTAGAGAGGCATGAGAAGTCTGGAGATTGTAACCCCAACAACAAAAAGAAACCCACTTGTCCTGTTAGGAGGTGCAAGGAAGTTTTGACGTTTTCCAATACCAGTACGTGTAAAATTTGCCACTTGAAGATCTGCCTCAAGCACCGTTTCCCAGCCGATCATGCTTGTAAAAGGGCTACTTCGTCTTCCTCGTCAGCGAATACAGCTGTTAATGGGCGATGGAAAGATCGCTTCTTGGCTGCTCTGGCCTCGAGGAATGGGCAAGACTGTGCCAAAAGTTCTACGTCTCCCACTCCTAGTACTCCATCACTCAAAGCCTGCTGA 570 0.486 MAGGTEAFPDLGKHCQHHYCNQLDFLPFTCDGCRQVFCLEHRSYKSHDCRKSDRNSRKVVVCETCSMSIETTGHNGEDEKAILERHEKSGDCNPNNKKKPTCPVRRCKEVLTFSNTSTCKICHLKICLKHRFPADHACKRATSSSSSANTAVNGRWKDRFLAALASRNGQDCAKSSTSPTPSTPSLKAC 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1817 189 MobiDBLite consensus disorder prediction 170 189 - -
Glsi12g1817 189 ProSiteProfiles Zinc finger AN1-type profile. 9 57 IPR000058 GO:0008270
Glsi12g1817 189 Gene3D - 2 73 IPR035896 -
Glsi12g1817 189 ProSiteProfiles Zinc finger AN1-type profile. 96 146 IPR000058 GO:0008270
Glsi12g1817 189 SMART AN1_Zf_4 102 143 IPR000058 GO:0008270
Glsi12g1817 189 SMART AN1_Zf_4 15 54 IPR000058 GO:0008270
Glsi12g1817 189 SUPERFAMILY AN1-like Zinc finger 5 58 IPR035896 -
Glsi12g1817 189 Pfam AN1-like Zinc finger 15 52 IPR000058 GO:0008270
Glsi12g1817 189 Pfam AN1-like Zinc finger 102 141 IPR000058 GO:0008270
Glsi12g1817 189 Gene3D - 77 155 IPR035896 -
Glsi12g1817 189 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 7 177 - -
Glsi12g1817 189 FunFam AN1-type zinc finger protein 2B isoform X1 5 66 - -
Glsi12g1817 189 SUPERFAMILY AN1-like Zinc finger 94 144 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1817 Glsi-ChrGlsi12 34208925 34209592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1817 2 172 C2H2 Transcription Factor Family AT3G28210 61.404 5.19e-77 227