Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1806 ATGGGCAATGGCCATTGTTGCCAGGTCTTGCCTAAATCCCAAACCTTCAAGACGAAAGTAGAAGCAGGAAGTAGTTTAAAGCATTCAGGAACTACTAGCTCACAGAGTAGCAACCACAATGGTGGGGGTTCGTCATCTCGTAGGCGGCATTCAAAGGATATATTTCCTGAACCTTCTAACATTCAAGATGTTTATGAGCTAAAGATCTGTGCTTTGGATATGGAGAGCTCTGAGAAGGTGGTTGCTGTGATTATGGTCGGCGGACCCACTAAAGGGACCAGATTTCGGCCTCTTTCGTTCAATATTCCGAAACCCCTTTTTCCTTTGGCTGGGTTGCCAATGGTTCAACATCCCATTTCTGCTTGTAGAAGGATACCCAATCTGGCGCAAATATTTCTGATTGGATTCTATGAGGAGCGAGAATTTGCGCTATATGTCTCTTCAGTTTCGAATGAGCTGAAGCTACCAGTAAGATATCTAAAGGAGAATAAACCACATGGTTCAGCGGGTGGCCTATACTACTTCAGAGATATTATCATGGAAGACAACCCATCACATATTTTTCTGCTAAATTGTGATGTTTGCTGCAGTTTTCCACTATCAGCCATGCTTGAGGCCCATAGAAGATACAGTGGGATGGGAACAATACTAGTAATCAAGGTTTCTGCTGAATCAGCCAGCCAGTTCGGTGAGTTGGTTGCTGATCCAATAACTAATGAATTGCTGCATTATACAGAGAAACCAGAGACTTTTGTTAGTGATTTGATAAATTGTGGTGTCTATATTTTCACCCCGGATATTTTTTCTGTCATCCAAGGTATATCTGTTAATCGAGAAGACAGAGCTAATCTACGTCGTGTATCCAGTTTTGAATCCCTTCAATCTGCCACAATCACAAGGAGTCTTCCTACAGATTTTGTAAGACTAGATCAAGATATTTTATCACCACTTGCTGGGAAGAAGCAATTGTATACGTATGAGACAATGGATTTCTGGGAGCAAATTAAAACTCCAGGAATGTCTTTGAAATGCTCAGAGTTGTATCTCGCCCAATTCCGCCTTACTTCACCCAATCTTTTGGCCTGTGGAGATGGTAAAAAGAATGCCAAAGTTATTGGTGATGTATACATTCATCCATCTGCAAAAGTACATCCGACTGCAAAGATTGGTCCCAATGTTTCCATATCAGCAAATGTTCGTGTAGGTGCAGGCGTCAGGCTAATAAGTTGTATTATCTTGGATGATGTCGAAATTAAGGCTGATGGAGACTATAAAGCAAAGCTTGGAGTAACCATCCTCGGAGAAGCTGTGGCGGTTGAAGATGAGGTGGTGGTGATCAGCAGCATTGTTCTTCCCAACAAGACTCTTAATGTCAGTGTACAAGAAGAAATAATCTTATAA 1401 0.4176 MGNGHCCQVLPKSQTFKTKVEAGSSLKHSGTTSSQSSNHNGGGSSSRRRHSKDIFPEPSNIQDVYELKICALDMESSEKVVAVIMVGGPTKGTRFRPLSFNIPKPLFPLAGLPMVQHPISACRRIPNLAQIFLIGFYEEREFALYVSSVSNELKLPVRYLKENKPHGSAGGLYYFRDIIMEDNPSHIFLLNCDVCCSFPLSAMLEAHRRYSGMGTILVIKVSAESASQFGELVADPITNELLHYTEKPETFVSDLINCGVYIFTPDIFSVIQGISVNREDRANLRRVSSFESLQSATITRSLPTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSELYLAQFRLTSPNLLACGDGKKNAKVIGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIILDDVEIKADGDYKAKLGVTILGEAVAVEDEVVVISSIVLPNKTLNVSVQEEIIL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1806 466 SUPERFAMILY Trimeric LpxA-like enzymes 366 451 IPR011004 -
Glsi12g1806 466 MobiDBLite consensus disorder prediction 19 44 - -
Glsi12g1806 466 Pfam Nucleotidyl transferase 82 284 IPR005835 GO:0009058
Glsi12g1806 466 Gene3D Hexapeptide repeat proteins 366 465 - -
Glsi12g1806 466 SUPERFAMILY Nucleotide-diphospho-sugar transferases 76 396 IPR029044 -
Glsi12g1806 466 MobiDBLite consensus disorder prediction 19 56 - -
Glsi12g1806 466 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 81 466 - -
Glsi12g1806 466 CDD M1P_guanylylT_A_like_N 82 348 - -
Glsi12g1806 466 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 66 351 IPR029044 -
Glsi12g1806 466 FunFam Mannose-1-phosphate guanyltransferase alpha 79 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1806 Glsi-ChrGlsi12 34136635 34143175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1806 73 286 Eukaryotic Initiation Factors Gene Family AT2G34970 22.000 9.61e-09 55.8