Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1804 ATGTCTTCCTCTGCTCCTCAAGAATCTGAGTCTACCCCACAGATCTACTGCCGAAAAGACAAGTCTCTCGGATTACTATGCTCCAACTTCTTGAAGCTATATAATCGCGAAGGTATTGGGACGATCGGACTTGACAATGCTGCAGCCCGATTAGGTTCGATTGTGTCAAGAAAGGCGAAGAACCAATACTTATGGAAAGGTTTCATAGAAATTCCTCGAGCTTTGAAGGAGATTAAGGAAGAGGGTCTGAGAGAAAAATCTGATGCACCCTGCTGCAGCTCAGCTGAAGATTTGAAGAACAAAGAAAATGGTGGGTCTGAAACCGATAGTGAGGACAATCCCTTGGCATCACCGAAAACGGATAGCAGAAGAGACAAATCTCTAACACTTTTGACACAGAATTTTATAAAGCTCTTCCTCTGTTCAGATGTCGCCTTTATATTGCTTGAAGATGCTGCCAAGATAATGCCGGGCGATGCCCAGAATTCAACTGCCTTGAGAACAAAAGTCCGACGTCTATATGATATAGCGAACGTCCTTTCCTCCATCAATCTGATTGAGAAGACAAATCATCCCGAGAATAGGAAAACAGCATATAGGTGGTTGGGAGGGACAATTAGTAAAGGATCTGATGGCACTTTAGATCAAAGTGCATCCAAGAAGAGAATGTTTGGAACTGAAATTACAAATTATAGTTTAAAGAGAAATAAAACTGATTCTTTAATGGATTCGCAGTTGCGTAAAAAGAGCACGCCTATGTATAAAAAACAACATGAATTGGAAAATGAATACAAGGATAAAACATTGGGGCAACCACCTACAAGCAGTTCAAAGGGTATAGATTTTGGTCCTTTTGCCCCTATCAAGCTTAGAAGAGAAGATCCTGAGCATAGAAATATGAGACAGGTTCATGACATGGAGACTATGAGTTCAAAATATCGCCATGAGTATCACAACCAAGCAACTCAATTATAA 975 0.4072 MSSSAPQESESTPQIYCRKDKSLGLLCSNFLKLYNREGIGTIGLDNAAARLGSIVSRKAKNQYLWKGFIEIPRALKEIKEEGLREKSDAPCCSSAEDLKNKENGGSETDSEDNPLASPKTDSRRDKSLTLLTQNFIKLFLCSDVAFILLEDAAKIMPGDAQNSTALRTKVRRLYDIANVLSSINLIEKTNHPENRKTAYRWLGGTISKGSDGTLDQSASKKRMFGTEITNYSLKRNKTDSLMDSQLRKKSTPMYKKQHELENEYKDKTLGQPPTSSSKGIDFGPFAPIKLRREDPEHRNMRQVHDMETMSSKYRHEYHNQATQL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1804 324 PANTHER TRANSCRIPTION FACTOR E2F 6 306 IPR015633 GO:0000978|GO:0006357
Glsi12g1804 324 MobiDBLite consensus disorder prediction 261 285 - -
Glsi12g1804 324 MobiDBLite consensus disorder prediction 100 123 - -
Glsi12g1804 324 Pfam E2F/DP family winged-helix DNA-binding domain 125 203 IPR003316 GO:0005667|GO:0006355
Glsi12g1804 324 Gene3D - 117 205 IPR036388 -
Glsi12g1804 324 Gene3D - 12 57 IPR036388 -
Glsi12g1804 324 SMART E2F_TDP_2 123 203 IPR003316 GO:0005667|GO:0006355
Glsi12g1804 324 SMART E2F_TDP_2 18 67 IPR003316 GO:0005667|GO:0006355
Glsi12g1804 324 FunFam E2F transcription factor-like E2FE 118 205 - -
Glsi12g1804 324 SUPERFAMILY "Winged helix" DNA-binding domain 125 203 IPR036390 -
Glsi12g1804 324 MobiDBLite consensus disorder prediction 88 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1804 Glsi-ChrGlsi12 34124020 34126824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1804 1 320 E2F-DP Transcription Factor Family AT3G01330 43.860 1.58e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Glsi12g1804 E2F_TDP 5.5e-18 CL0123