Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1802 ATGAAAACTAGCTTTAAGTTATGGTTATTTTCTGAATTTATAAGGCAGCAGTACAAGATGAAGAGAATCAGGGACGATATCTATGCTGGCTCTGGCTCTCAATTTAAGCGACCCTTTCGCTCCTCACGTGTGGATTCCTATGGCCAATCCAAAGTCCCTGGAGGAGGAGAAGATGGTGGTGGTGAAGGTTGTGGTGGTGGTGGAGGAGGAGGAGATGCTTTGCAGAAATTGACTACCACAGATGCCTTATCATACTTAAAGGAAGTGAAAGACATATTTCAGGACCAAAGAGAAAAATATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAACTATTCAAAGGGCACAACAATTTGATTTTTGGATTTAACACCTTCTTGCCGAAAGGATATGAGATAACACTTGATGAGGATGAGGCTCCTTTAAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAATGACGAGCGTGTTTACAAATCATTCTTGGACATTTTGAATATGTACCGGAAAGAGAACAAGGACATTAATGATGTTTATAAGGAGCAACGCTGTCGACGGGATAAGCTTATTACATTTCGTGACCATGATCGTAGTGTTGATCACCCTGAGCTGGATGATGACAAGGCTATGATTAAAGGGCACAAGGAGCCAAGGAAGTGTGTTGAGAAGGAGAGTAGGGATAGGAGAATTTATGACCAGGATGAGAGAGGACCTGATCTTGATAACAATAGGAATTTAAACTTGCAATGTTTTCCTGACAAAACAAAATCTGTCAAGAAGACTGAGGGTTTTGGGTTGACTGGTGACTTTGCTTCTTATGATGATAAAGATACCCTAAAAGGCATGTATAACCAAGCTTTTAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGGGCAACTCAGATGACTACCAGTCATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGGAAGGCTTTACATGATATGGTAATCGATTTACTTGGAAAGCATCCTGATCTTATGGATGAATTCAATGATTTCTTGGAGCGATGTGAAAATATTGATGGATTCCTTGCTGGTGTCATAAGTAAGAAGTCATTGTCTAGTGATGGTCAATTATCCATATCATCAAATTTGGAGGACAAAGATAAGGACCAGAAGCGGGACATGGATGGAACTAAAGAGAAGGAGAGATACCAGGAGAAGTACTTGGCAAAATCAATTCAAGAACTTGACCTCAGCAACTGTGAACGTTGTACTCCCAGCTACCGGCTTTTGCCTGAAGATTATCCAATTCCTACGGCTAGTCAGAGATCGGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTACGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCAGTGAGCTCAGCTGCTCAACGTACAGAGGACTTGTATAATAGCATTGTTGAAAAGAAGATCAATATAGAGAGTTCAATCCGTATTGAAGAACACTTTAGTGTTCTAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGATGCTATAGAGATATTACGTAAAACTCCAACTCTTGCTCTCCCTGTGATATTGAATCGTCTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGTTCAGATTTCAATAAGGTTTGGGCTGAAATATATGCTAAAAACCACTACAAATCACTTGATCACCGTAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCATTGGTAGCTGAGATCAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGATATTCTTTGGGCCATTGCTGCTGGAAATAAGCAGCCTCTAATTCCACATCTGAAATTTGAATATTCAGATGTTAGGATTCATGAAGACCTATATAAACTTGTTCGTTATTCATGTGAAGAGGTTCTCCCAAGTAAGGAGTTGTTAAATAAAATTATGAGACTTTGGACTACCTTCTTGGAGCCAATGTTTGGTGTTTCTTCTCGATGTCATGGGACAGTAGATGTAGAGGACAGGAGAGATGGGCATTATGTTCCCAATTTTGTTGCATCAAATATAGGAGATTTTGGGAGCCCTTTTGGGGACTCTAGTTTCATGGATTCTACGCTACCAAAATCTAGTAATAATGAAGCTGATGATAGAGTAACTGAAGTAAAGAATGTTCACCAGATTAGTTTAGCAGCCAATGATAAAGAAAATGGATTGGTTGATGGTGATAATGTTTGTAGAGATGATGTGATAGATAGAGGGCAGAAAAATGTGGATTGTAGTGATAAAGTCTCTGGGTTTAGTAAACAATTTGCCTCTGATGAACAAGAAGCTGATTACAATGCATCATCAATTGCGGTTAGAGGAGAAAATAACCTGAGCAGAACCAGCTTGGAGATGACCTCAGGTTGTATCCTTACTTCATCCCAACCTACTGCCACACTTGGTGATGATTACTCAGTAGCCAAGTCTCAGAGTAGTAATGTATCTTTGGTGGAGGGACGCGACATTGCAACTCTAGTTCCATTGGCCAATGGAGTGCTAATTGAAAGCAGTAAAGTTAAAAGCCAAGAGGAATTTGCTGGGCCTTGCAAAATTGAAAAGGAAGAGGGTGAATTATCGCCCACACCCATTGGGGATTCTGAAGAGGATAATTTTGTTGGCTATGGAGATGCTAATGCACCGGCCACACCCAAGTCAAAGATCAATCTTGAAAGAAGTAAATGTCAATCCCAAAATGGAGAGGAAGAATGCTGTCTGGACGCTGGGGTTCTTAATGATGCAGATGCTGATGGTGAGAACGGTGAAAATGCTTCTGAAGTTGGTGAAGATGTCTCAGGTAGTGAATCTGCTAGTGATGAATGCTCCCGGCAAGAGCACGTAGGGGAGGAAGATATAGAACATGACACTATTAATGGTAAGGCTGAGAGTGAAGATGAAGCTGAGAGGATGTTTATTGCACGATCTGCTGGAGGAGATGGCTCATCATTACAATCGTCAGAAAGGTCCCTTTTGTCGGTGAAGCCTCTCACAAAGCATATATCAGCAGCTTCACTTGTTGAAGAAAGAAAGAATTCAAGGGTTTTTTACGGGAATGATGATTTCTATGTGCTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCAGCAAAAACAAATTTAATGAGTGCTGAAAAGAAATGGAGAATTTCAAAGGATGCTAATTCTCCAGATCCTTATACAAGATTTATGAATGCACTGTACAACTTGCTTGATGGATCTGCTGACAATACAAAGTTTGAAGATGAATGCCGAGCAATTATTGGGAACCAGTCATACATGTTATTCACATTGGACAAATTAATATATAAATTGGTTAGACAGCTTCAAACTGTCGCAACCGATGAGATAGACAATAAGCTTCTCCAATTGTTTGAGTATGAAAAGTCCCGGAAACCTGGGAGATCAACTGATTCAGTATATCATGCAAATGCACGTGTCATCCTTCATGAGGAAAACCTATATCATTTGGAATGTTCATCTGGCCCTTCCCAACTATCCATCCAGCTAATGGACAATATGACCGAAAATCCTGAGGTGTTTGCCGTTTCTATTGATCCAAATTTTACCTTTTATCTGTACAATGATTTTCTGTCAGTCTTTCCTGGCAAAAAGGAACCCCATGGCATTATACTGCAAAGAAACAAGCGCAAATATGGTGACTTGGATGAGCTTTCAGCAATATGCTCAGCAATGGAAGGTGTAAAAATAATTAATGGATTGGAATGTAAAATGGCTTGCAAGTCATCCGTGATCTCCTATGTTCTGGACACAGAAGATCTCTTCTTTCGTCGCAGAAGAAACCTAAAAACATCATTGGGGATATCTTCCAAGCATAATAGGGCTAGAGTTGAAAGATTCCACAGATTCTTATCAGGCTAG 4080 0.3978 MKTSFKLWLFSEFIRQQYKMKRIRDDIYAGSGSQFKRPFRSSRVDSYGQSKVPGGGEDGGGEGCGGGGGGGDALQKLTTTDALSYLKEVKDIFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPLKKTVEFEEAISFVNKIKKRFQNDERVYKSFLDILNMYRKENKDINDVYKEQRCRRDKLITFRDHDRSVDHPELDDDKAMIKGHKEPRKCVEKESRDRRIYDQDERGPDLDNNRNLNLQCFPDKTKSVKKTEGFGLTGDFASYDDKDTLKGMYNQAFSFCEKVKEKLGNSDDYQSFLKCLHIFSNGIIKRKALHDMVIDLLGKHPDLMDEFNDFLERCENIDGFLAGVISKKSLSSDGQLSISSNLEDKDKDQKRDMDGTKEKERYQEKYLAKSIQELDLSNCERCTPSYRLLPEDYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAQRTEDLYNSIVEKKINIESSIRIEEHFSVLNLRCIERLYGDHGLDAIEILRKTPTLALPVILNRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDILWAIAAGNKQPLIPHLKFEYSDVRIHEDLYKLVRYSCEEVLPSKELLNKIMRLWTTFLEPMFGVSSRCHGTVDVEDRRDGHYVPNFVASNIGDFGSPFGDSSFMDSTLPKSSNNEADDRVTEVKNVHQISLAANDKENGLVDGDNVCRDDVIDRGQKNVDCSDKVSGFSKQFASDEQEADYNASSIAVRGENNLSRTSLEMTSGCILTSSQPTATLGDDYSVAKSQSSNVSLVEGRDIATLVPLANGVLIESSKVKSQEEFAGPCKIEKEEGELSPTPIGDSEEDNFVGYGDANAPATPKSKINLERSKCQSQNGEEECCLDAGVLNDADADGENGENASEVGEDVSGSESASDECSRQEHVGEEDIEHDTINGKAESEDEAERMFIARSAGGDGSSLQSSERSLLSVKPLTKHISAASLVEERKNSRVFYGNDDFYVLFRLHQILYERILSAKTNLMSAEKKWRISKDANSPDPYTRFMNALYNLLDGSADNTKFEDECRAIIGNQSYMLFTLDKLIYKLVRQLQTVATDEIDNKLLQLFEYEKSRKPGRSTDSVYHANARVILHEENLYHLECSSGPSQLSIQLMDNMTENPEVFAVSIDPNFTFYLYNDFLSVFPGKKEPHGIILQRNKRKYGDLDELSAICSAMEGVKIINGLECKMACKSSVISYVLDTEDLFFRRRRNLKTSLGISSKHNRARVERFHRFLSG 1359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1802 1359 SMART hdac_interact2seq4b 438 538 IPR013194 -
Glsi12g1802 1359 ProSiteProfiles PAH domain profile. 75 145 IPR003822 GO:0006355
Glsi12g1802 1359 Gene3D Paired amphipathic helix 158 223 IPR036600 GO:0006355
Glsi12g1802 1359 Pfam Sin3 family co-repressor 440 531 IPR013194 -
Glsi12g1802 1359 Gene3D Paired amphipathic helix 81 143 IPR036600 GO:0006355
Glsi12g1802 1359 PANTHER SIN3B-RELATED 75 1221 IPR039774 GO:0003714
Glsi12g1802 1359 FunFam Paired amphipathic helix protein Sin3 81 143 - -
Glsi12g1802 1359 FunFam Paired amphipathic helix protein SIN3 303 376 - -
Glsi12g1802 1359 ProSiteProfiles PAH domain profile. 305 374 IPR003822 GO:0006355
Glsi12g1802 1359 MobiDBLite consensus disorder prediction 39 70 - -
Glsi12g1802 1359 SUPERFAMILY PAH2 domain 75 144 IPR036600 GO:0006355
Glsi12g1802 1359 MobiDBLite consensus disorder prediction 248 269 - -
Glsi12g1802 1359 MobiDBLite consensus disorder prediction 1004 1030 - -
Glsi12g1802 1359 MobiDBLite consensus disorder prediction 248 267 - -
Glsi12g1802 1359 MobiDBLite consensus disorder prediction 978 1030 - -
Glsi12g1802 1359 Gene3D Paired amphipathic helix 303 376 IPR036600 GO:0006355
Glsi12g1802 1359 MobiDBLite consensus disorder prediction 394 420 - -
Glsi12g1802 1359 Pfam Paired amphipathic helix repeat 327 371 IPR003822 GO:0006355
Glsi12g1802 1359 Pfam Paired amphipathic helix repeat 98 142 IPR003822 GO:0006355
Glsi12g1802 1359 Pfam Paired amphipathic helix repeat 183 207 IPR003822 GO:0006355
Glsi12g1802 1359 FunFam Paired amphipathic helix SIN3-like protein 158 210 - -
Glsi12g1802 1359 Pfam C-terminal domain of Sin3a protein 1080 1328 IPR031693 -
Glsi12g1802 1359 SUPERFAMILY PAH2 domain 309 374 IPR036600 GO:0006355
Glsi12g1802 1359 ProSiteProfiles PAH domain profile. 159 241 IPR003822 GO:0006355
Glsi12g1802 1359 MobiDBLite consensus disorder prediction 400 420 - -
Glsi12g1802 1359 SUPERFAMILY PAH2 domain 156 207 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1802 Glsi-ChrGlsi12 34103776 34115930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1802 65 157 WRKY Transcription Factor Family AT4G12020 59.574 8.18e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi12g1802 Sin3a_C 1.2e-53 No_clan