Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1801 ATGGATGGAGCTCAGAAAACAAGTGTCGCCGCTGTGGCTAGGAAGAAGAAGAAGAATGGGTCTATTCGATCCATTTTCATGCACGCCGATAGCCTAGACTGGTCTTTTATGGTTTTAGGTTCCGTCGGGTCAATTGGCGACGGGTTCACCACCCCTCTGGTGTTGTTCATCAGTAGCCGCTTGATGAACAATATTGGCGGTGGGCCTACCATGGAAGAAAAGGCTTTTCTCCATAACATTAATAAGAATGCAGTGGCTTTGCTATATTTGGCTTCTGGAACATTTCTTGCTTGCTTCCTCGAGGGTTATTGTTGGACGAGAACAGGTGAGAGACAAGCTGCGAGAATGAGAGCCAGGTATTTGAAAGCAGTGCTCAGACAAGAAGTGGCTTACTTTGATCTGAACGTGACAAGCACGTCCGAGGTGATCACCAGCGTCTCTAACGATAGCCTAGTAATTCAAGATGTTTTTGGCGAAAAGGTTCCAAATTTCTTGACGAACGTCTCTATGTTCATTGGGAGCTACATAGCGGCTTTCGCAATGTTGTGGAGACTGGCTATTGTGGGGTTCCCTTTTGTGGTTTTTCTAGTGATCCCCGGTTTGATTTACGGGAGAACTTTAATGGGGTTGGCTAGAAAGATCAGGGAAGAGTATAATAAGGCTGGCACAATAGCAGAGCAGGCAATATCTTCCATCAGAACTGTCTACTCCTTTGTGGGTGAAAGCAAGACCATAGCTGCATTCTCTTCCGCTCTACAAGGATCTGTTAAGTTGGGGCTGAAGCAGGGCTTAGCTAAAGGCTTAGCCATCGGAAGCAATGGAATTGTGTTCGCCATATGGTCTTTCATGTCGTATTACGGTAGCACGCTGGTCATGTACCATGGCGCTCAAGGAGGGACTGTTTTTGCTGTTGGAGCGGCCATAGCTGTCGGTGGATTAGCTTTAGGTGCTGCTTTATCTAACATGAAGTACTTCTCGGAAGCAAGTTCAGCAGGGGAACGTATAATGGAAGTGATAAAAAGGGTTCCAACGATTGATTCTGATAATATGGCTGGGGAGATTCTGGAGAGCGTTTCTGGGGAAGTGAAATTTGAACACGTACAATTTGCGTACCCATCGAGGCCTGATAGCATTATCCTCAATGATTTCTGCTTAAAGATTCCAGCAGGCAAGACTGTGGCCCTGGTTGGCGGGAGTGGATCAGGAAAATCCACAGTGATTTCGCTTTTGCAGAGATTTTATGACCCTATTGGGGGAGAGATACGTCTTGACGGGGTGGCCATTCAGAAGATGCAGCTCAAGTGGCTCAGGTCCCAGATGGGCTTGGTGAGCCAAGAGCCTGCTCTGTTCGCAACTAGCATTAAGGAGAACATACTTTTTGGAAAGGAGGACGCGACAGAGGAAGAGATTGTGGAGGCTGCCAAAGCTTCCAATGCTCATAATTTCATTTCACAGTTGCCTCAGGAATACGATACCCAGGTTGGTGAAAGGGGTGTTCAAATGTCAGGGGGACAAAAACAGAGAATCGCCATTGCGCGCGCAATCATAAAGAAACCACGAATACTTCTGCTAGATGAAGCAACCAGTGCATTAGACTCCGAGTCCGAACGAGTTGTTCAAGAAGCTCTGGACAAAGCAGCCGTAGGTCGCACCACTATAATTATTGCTCACCGCTTATCCACCATTCGAAACGCCGATGTCATTGCCGTTGTGCAGAGCGGCAAGATCATGGAGATGGGCTCACACGAAGAGCTGATTGGAAACGACAATGGGCTTTACTCCTCACTGGTTCGTCTCCAACAAACAGAAAAATCCGACACCCAAGAAGAGATAGTGTCTTCCCCATCGTGTATATCAAACAGAGATATAAACAACACCAGCAGTCGTAGGCTCTCTCTGGTGAGTCGTTCTAGCTCTGCCAATTCAATAGCACGGAATCCACCTTCACTTGCTGATGAAGACGTTGATGATGCTATAGAAGATCAGAAATTCCCCGTTCCTTCATTTCGGAGATTGCTGGCCCTTAATCTACCGGAGTGGAAACAAGCGACTCTGGGGTGTATAAGTGCGGTGTTCTTCGGCGCCATTCAGCCACTGTACGCATTCTCAATGGGTTCCATGATATCAGTGTATTTTCTGACAGACCACGATGAGATCAAAGAGAAGACGAGGATTTACTCGCTCTGTTTTGTGGGTTTGTCTGTGTTCTCTTTTCTTGTTAATATAAGCCAGCATTATAGTTTTGCTTACATGGGAGAGTGCTTGACCAAAAGGATCAGAGAGAGAATGCTTTCAAAAATGCTCACATTTGAAGTTGGATGGTTTGATCAGGACGAAAATTCCAGTGGTGCTATTTGCTCTAGACTTGCCAAAGATGCCAATGTGGTGAGGTCTTTGGTGGGTGATAGAATGGCTCTACTGGTACAAACTTTCTCAGCGGTCATAATAGCGTGCACAATGGGCCTGGTAATTGCTTGGAGGCTCGCCATTGTTATGATAGCAGCACAACCCCTTATTATTGGTTGCTTCTACACTAGGCGTGTCCTGCTCAAGAGCATGTCCAGCAAGGCCATCAAAGCCCAAGAGGAAAGTAGCAAGCTAGCTGCCGAAGCGGTTTCCAACCTTCGTACCGTCACTGCCTTCTCCTCCCAAGACCGCATACTCAAAATGCTCGAAAAGGCCCAAGAAGGCCCAAGCCGGGAGAGCATTCGTCAATCGTGGTACGCTGGTATTGGGCTTGCTAGTTCCCAAAGCTTCATGTCCTGTACCTGGGCTTTAGACTTTTGGTATGGTGGCAAGCTTATTTCCCATGGCTACATCTCAGCCAAAGCACTGTTTGAGACGTTCATGATTTTGGTGAGCACAGGCCGTGTCATTGCTGACGCTGGTAGCATGACCTCGGATCTTGTTAAGGGCTCCGATTCTGTGGGCTCTGTTTTTGCAGTTTTGGATAGATACACGAAAATTGAGCCCGAAGACCCAAATGGGTACAAGCCTGACAAGATAACGGGCCAGATAGAACTTCATGATGTCCATTTTACGTACCCGGCTAGGCCCGATGTCATGATCTTTGAAGGGTTCTCAATCAAAATTGAAGCAGGGAAATCAACGGCATTAGTGGGCCAAAGTGGGTCTGGCAAATCAACCATTATAGGCTTAATAGAGAGATTTTATGACCCATCCAAAGGGAGGGTGATCATAGACGGTAAAGATATAAAGTCATATGAGCTTAGGTCTCTAAGAAAACACATAGCACTTGTCAGCCAAGAGCCCGCATTATTTAGTGGGACCATAAGAGAGAACATAGCATATGGAGCGTCGGATAAGGTTGATGAAGCAGAGATCGTAGAGGCTGCTATGGGAGCCAACGCTCATGATTTCATCGGAAGCCTGAAGGATGGATATGACACACGGTGCGGGGACAGAGGAGTGCAGCTGTCAGGGGGTCAGAAGCAGAGGATAGCAATAGCGAGGGCTATACTGAAGAACCCAGCGGTGTTGCTGCTGGACGAGGCGACGAGCGCGCTTGATAGTCAGTCGGAGAAGGTGGTGCAAGACGCGCTGGAGCGTGTGATGGTGGGGAGGACAAGCGTGGTGGTGGCCCACAGGTTGAGCACCATACAAAACTGTGATCTAATTGCAGTGTTGGATAAAGGGAAGGTGGTGGAGAAAGGGAGCCATTCGTCTTTGTTGGCCAAGGGACCAAGTGGAGCTTATTACTCTTTGGTTAATATTCAAAGGAGACCAGCCAACGCTGGCAACACAATCTCCTAA 3774 0.4759 MDGAQKTSVAAVARKKKKNGSIRSIFMHADSLDWSFMVLGSVGSIGDGFTTPLVLFISSRLMNNIGGGPTMEEKAFLHNINKNAVALLYLASGTFLACFLEGYCWTRTGERQAARMRARYLKAVLRQEVAYFDLNVTSTSEVITSVSNDSLVIQDVFGEKVPNFLTNVSMFIGSYIAAFAMLWRLAIVGFPFVVFLVIPGLIYGRTLMGLARKIREEYNKAGTIAEQAISSIRTVYSFVGESKTIAAFSSALQGSVKLGLKQGLAKGLAIGSNGIVFAIWSFMSYYGSTLVMYHGAQGGTVFAVGAAIAVGGLALGAALSNMKYFSEASSAGERIMEVIKRVPTIDSDNMAGEILESVSGEVKFEHVQFAYPSRPDSIILNDFCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIGGEIRLDGVAIQKMQLKWLRSQMGLVSQEPALFATSIKENILFGKEDATEEEIVEAAKASNAHNFISQLPQEYDTQVGERGVQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQSGKIMEMGSHEELIGNDNGLYSSLVRLQQTEKSDTQEEIVSSPSCISNRDINNTSSRRLSLVSRSSSANSIARNPPSLADEDVDDAIEDQKFPVPSFRRLLALNLPEWKQATLGCISAVFFGAIQPLYAFSMGSMISVYFLTDHDEIKEKTRIYSLCFVGLSVFSFLVNISQHYSFAYMGECLTKRIRERMLSKMLTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRMALLVQTFSAVIIACTMGLVIAWRLAIVMIAAQPLIIGCFYTRRVLLKSMSSKAIKAQEESSKLAAEAVSNLRTVTAFSSQDRILKMLEKAQEGPSRESIRQSWYAGIGLASSQSFMSCTWALDFWYGGKLISHGYISAKALFETFMILVSTGRVIADAGSMTSDLVKGSDSVGSVFAVLDRYTKIEPEDPNGYKPDKITGQIELHDVHFTYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPSKGRVIIDGKDIKSYELRSLRKHIALVSQEPALFSGTIRENIAYGASDKVDEAEIVEAAMGANAHDFIGSLKDGYDTRCGDRGVQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKVVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGKVVEKGSHSSLLAKGPSGAYYSLVNIQRRPANAGNTIS 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1801 1257 PANTHER ABC TRANSPORTER B FAMILY 13 700 IPR039421 -
Glsi12g1801 1257 SMART AAA_5 389 575 IPR003593 GO:0016887
Glsi12g1801 1257 SMART AAA_5 1033 1226 IPR003593 GO:0016887
Glsi12g1801 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 995 1246 IPR027417 -
Glsi12g1801 1257 FunFam ABC transporter B family member 4 352 608 - -
Glsi12g1801 1257 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Glsi12g1801 1257 SUPERFAMILY ABC transporter transmembrane region 31 343 IPR036640 GO:0005524|GO:0016020
Glsi12g1801 1257 SUPERFAMILY ABC transporter transmembrane region 665 990 IPR036640 GO:0005524|GO:0016020
Glsi12g1801 1257 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Glsi12g1801 1257 Pfam ABC transporter transmembrane region 39 304 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1801 1257 Pfam ABC transporter transmembrane region 685 953 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1801 1257 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 335 - -
Glsi12g1801 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1801 1257 Gene3D ABC transporter type 1, transmembrane domain 648 994 IPR036640 GO:0005524|GO:0016020
Glsi12g1801 1257 FunFam ABC transporter B family member 1 24 361 - -
Glsi12g1801 1257 Gene3D - 352 601 IPR027417 -
Glsi12g1801 1257 Pfam ABC transporter 1026 1174 IPR003439 GO:0005524
Glsi12g1801 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Glsi12g1801 1257 Gene3D - 996 1253 IPR027417 -
Glsi12g1801 1257 FunFam Putative ABC transporter B family member 8 649 994 - -
Glsi12g1801 1257 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Glsi12g1801 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 600 IPR027417 -
Glsi12g1801 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1243 IPR003439 GO:0005524
Glsi12g1801 1257 CDD ABC_MTABC3_MDL1_MDL2 1006 1246 - -
Glsi12g1801 1257 FunFam ABC transporter B family member 4 996 1252 - -
Glsi12g1801 1257 CDD ABC_6TM_Pgp_ABCB1_D2_like 673 989 - -
Glsi12g1801 1257 Gene3D ABC transporter type 1, transmembrane domain 25 613 IPR036640 GO:0005524|GO:0016020
Glsi12g1801 1257 ProSitePatterns ABC transporters family signature. 1146 1160 IPR017871 GO:0005524|GO:0016887
Glsi12g1801 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 685 971 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1801 Glsi-ChrGlsi12 34098022 34103531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1801 2 1247 Calmodulin-binding Proteins AT2G36910 45.154 0.0 1094