Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1796 ATGGAAGAAGCTTCACTTGATCTTAGAATTTGCGCGCTACTACTCTGCAGCTTGATGGGTTTATGGGGTTTTGCTGCCTCTGAGGTTAAAGATGACGTGAAATGCCTCAGAGGCCTTCAAGAGTCGCTCAGTGATCCTGAAGACAGGCTTGATAACTGGCGATTCAACAATAACACCCTCGGATTCATATGCAACTTCGTCGGTGTTACGTGCTGGAACTTACAGGAGAATCGCATAATCAATCTGGAGCTCAATGGTATGAACCTTTCGGGTCAGGTGCCAGAGTCGCTGAAGTATTGTGGGAGTCTGCAACAACTGGATCTTGGATCCAACGACCTTTCTGGTATGATTCCTACTGAGATTTGTAGTTGGTTGCCCTTTTTAGTAAAACTGACCCTGTCGGACAATCATCTTTCTGGGCCTATACCCCCTACTCTGGTCAATTGCACGTATTTAAACGAGTTAACTCTTTCAAATAATCAGCTTTCGGGTGTCATTCCTTACGAATTTGGGACCTTGAGTAGGCTTACAAAGTTTTCTGTAGCTAACAATCATCTTACGGGTACGATTCCTTCGTTTTTTAGTCGGTTTGACAAGGCGGACTTCGATGGGAATAGTGGGCTTTGCGGGGATCCTCTTGGATCCAAGTGTGGAGGGCTGAGTAAGAAGAATCTAGCCATTATTATAGCTGCTGGGGTGTTTGGTGCAGCTGCTTCTTTGTTATTGGCTCTTGGGTTGTGGTGGTGGTATCATTTGAGGTTGAGTAGGAAGAAGACAGGATATGGAGTTGGAGCAGGAGATGATTGGGCTTTGAAATTGAGGGGTCACAAACTTGTACAAGTTACTCTGTTTCAGAAACCCCTTGTGAAGGTTAAACTGGGCGATTTGATGGCTTCTACCAATAATTTCAGTGCAGAAAATCTTCTTATTTCAACGAGAACAGGGACTACTTATAAAGCAGATCTTCCTGATGGGTCAACACTTGCAGTCAAGCGGCTCAACACCTGTAAAATTGGGGAGAAGCAGTTTCGCATGGAGATGAATAGGCTAGGCCAAGTCAGGCACCCGAATTTAGCGCCCCTTTTGGGATTCTGTATAGTGGAAGAGGAAAAGCTTCTGGTTTATAAGCGCATGTCAAATGGGACTCTGTATTCCTTGTTGCATAAAAATGGCAGTGCATTAGATTGGCCAATGCGATTCAGGATAGGATTGGGGGCAGCTAGGGGTCTTGCTTATCTGCATCATGGGTGCCATCCTCCTATTATACAACAAAACATCTGTTCCAATGTGATCCTTGTTGATGAAGATTTTGATGCTCGATTGTTGGACTTTGGACTCGCTAGGTTAATGACATCTGATTCTAATGGGAGTAGTTTTACGAATGGAGACTTCGGAGAACTTGGCTATATTGCACCGGAATATCCAGGTACCCTGCTTGCTTCACTAAAAGGGGATGTGTATGGATTTGGGGTTGTGCTTTTGGAGTTGGTCACTGGGCGCAAACCTCTCGAAGTCGGCAATGGAGAGGAAGAAGAAACTAAGGTTAATTTAGTGGATTGGGTAAATATACTTTCTAGCTCTGGTCGAATCAAGGATTGCATTGATAAGGCCATAAGTGGAAGGGGACATGATGAGGAGATTTTGCAGTTTCTGAAAATTGCATGTAACTCTGTGGTTTCTCACCCCGTGGATAGGTTGTCTATGTACCAGGTTTATCATTCGCTGAAGAGTTTGTCCAAAGACCAAAGTTTCTCTGAACATGATGATGAATTTCCATTGATCTTTGGTAAGCCAAATAATGATGAGCTGGTCTAG 1815 0.4413 MEEASLDLRICALLLCSLMGLWGFAASEVKDDVKCLRGLQESLSDPEDRLDNWRFNNNTLGFICNFVGVTCWNLQENRIINLELNGMNLSGQVPESLKYCGSLQQLDLGSNDLSGMIPTEICSWLPFLVKLTLSDNHLSGPIPPTLVNCTYLNELTLSNNQLSGVIPYEFGTLSRLTKFSVANNHLTGTIPSFFSRFDKADFDGNSGLCGDPLGSKCGGLSKKNLAIIIAAGVFGAAASLLLALGLWWWYHLRLSRKKTGYGVGAGDDWALKLRGHKLVQVTLFQKPLVKVKLGDLMASTNNFSAENLLISTRTGTTYKADLPDGSTLAVKRLNTCKIGEKQFRMEMNRLGQVRHPNLAPLLGFCIVEEEKLLVYKRMSNGTLYSLLHKNGSALDWPMRFRIGLGAARGLAYLHHGCHPPIIQQNICSNVILVDEDFDARLLDFGLARLMTSDSNGSSFTNGDFGELGYIAPEYPGTLLASLKGDVYGFGVVLLELVTGRKPLEVGNGEEEETKVNLVDWVNILSSSGRIKDCIDKAISGRGHDEEILQFLKIACNSVVSHPVDRLSMYQVYHSLKSLSKDQSFSEHDDEFPLIFGKPNNDELV 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1796 604 SUPERFAMILY L domain-like 30 205 - -
Glsi12g1796 604 Gene3D Phosphorylase Kinase; domain 1 264 376 - -
Glsi12g1796 604 Pfam Leucine rich repeat 128 186 IPR001611 GO:0005515
Glsi12g1796 604 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 70 577 - -
Glsi12g1796 604 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 264 377 - -
Glsi12g1796 604 Gene3D Ribonuclease Inhibitor 29 219 IPR032675 -
Glsi12g1796 604 Gene3D Transferase(Phosphotransferase) domain 1 378 599 - -
Glsi12g1796 604 ProSiteProfiles Protein kinase domain profile. 303 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1796 604 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 29 218 - -
Glsi12g1796 604 SUPERFAMILY Protein kinase-like (PK-like) 281 575 IPR011009 -
Glsi12g1796 604 Pfam Protein tyrosine and serine/threonine kinase 324 504 IPR001245 GO:0004672|GO:0006468
Glsi12g1796 604 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1796 Glsi-ChrGlsi12 34056677 34058491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1796 30 603 Receptor kinase-like Gene Family AT3G28450 64.837 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Glsi12g1796 PK_Tyr_Ser-Thr 1.3e-26 CL0016