Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1793 ATGGAACTTACCTATTTTCGAATTGGAATACAATACATTTCTGATGACCTATCCCTTTCAAATAGTAAAAGAATCCCTCAAACTGATTTCTCGAGAGGGTTTATGGATTGCTTGCCATGTTTTCTCAGACTCTCTTTCAAAATGGGAAGACCACCTTGCTGTGATAAATCCAATGTGAAAAGGGGCCTTTGGACTGCAGAGGAAGATGCAAAAATACTTGCTTATGTATCCAATCATGGGATTGGGAATTGGACGTTGGTTCCAAAGAAAGCAGGTGAGTTCTACACAACTGAGAGATGGTCTTTGATCGCAAAGCGACTTCCTGGGAGAACAGACAACGATGTCAAGAACCACTGGAACACAAAGCTCAGGAAGAAGCTTATGAAGATGGGAATTGACCCAGTTACCCATAAGCCTGTGTCTCAGGTCCTCTCTGACTTGGGGAGTATCAGTGGCCTCCCAAGCACCATGCAGCCAAATATCAGAACCGAAGCATCTCCTGCCCAGTACTCATCAGGTACAAAGAGGAAGTTAATGGTTGAGCAAGCACAAGAAGATCAGGCTCACCAATGGGAACATCAGGTGCGGTTCCAAGTCATTAACCCAGTTGATCATCAGAATGTCCAATCTCATGTCTCTAATGAAGCTGCATCTTCATGTTCATCATCATCTTCCTCTAATCTCACACGACTAAGCTCACCACCTCAGCCACAAATCTCAGCCTTTGATTGGAGTGAGTTTCTTCAGAGTGACCCATTCATGTGCACGGAGTTTCGGCAGTATGATATACAGGGGGTTTTATCATCACTGAGTCCCTCAGTTGTAATGCTAAACAAGCAAGGAGCTGCAAGTGAATATGAAGGAAGCATGGAGAACTGTCAAATTAATAATAAGCAATGTGAAGGCACTTCATCTTCAGGGAATTCATTCGTGGATGGTATTTTGGACAGGGATAGTGAGATCAGGGCAGCATTTCCGGAACTTTTGGATGGATCTTTTGATTACTAG 1008 0.4355 MELTYFRIGIQYISDDLSLSNSKRIPQTDFSRGFMDCLPCFLRLSFKMGRPPCCDKSNVKRGLWTAEEDAKILAYVSNHGIGNWTLVPKKAGEFYTTERWSLIAKRLPGRTDNDVKNHWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISGLPSTMQPNIRTEASPAQYSSGTKRKLMVEQAQEDQAHQWEHQVRFQVINPVDHQNVQSHVSNEAASSCSSSSSSNLTRLSSPPQPQISAFDWSEFLQSDPFMCTEFRQYDIQGVLSSLSPSVVMLNKQGAASEYEGSMENCQINNKQCEGTSSSGNSFVDGILDRDSEIRAAFPELLDGSFDY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1793 335 PANTHER F14D16.11-RELATED 48 92 - -
Glsi12g1793 335 Pfam Myb-like DNA-binding domain 64 127 - -
Glsi12g1793 335 Gene3D - 58 129 - -
Glsi12g1793 335 ProSiteProfiles Myb-like domain profile. 56 123 IPR001005 -
Glsi12g1793 335 MobiDBLite consensus disorder prediction 209 235 - -
Glsi12g1793 335 CDD SANT 64 123 IPR001005 -
Glsi12g1793 335 SUPERFAMILY Homeodomain-like 50 132 IPR009057 -
Glsi12g1793 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 127 IPR017930 -
Glsi12g1793 335 SMART sant 60 125 IPR001005 -
Glsi12g1793 335 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1793 Glsi-ChrGlsi12 34033420 34035671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1793 48 335 MYB Transcription Factor Family AT3G28470 40.476 1.66e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi12g1793 Myb_DNA-binding 3.8e-13 CL0123