Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1791 ATGAGTCTATGTAGTAGCAGTGTTTCTGCCTCTAATAGTGTGAGTAGTAGCAAGATGAGCAATAGCAACTTGGAGACTCACAGGAGCACTGAATCTATGACGGATTGTGATGGAAGTTACAAGAGTAGCTCCGGCTGTGTAAGTAATTCCAACAGTTATGATGCCAATGAGGCCAGTTTTAGGAGCTTTTGCTCTTCCAAACCTCACAAGGGCAACGATATTAGATGGGATGCTATACAATGTGCGATAGCTAAAGATGGGGAATTGGGTTTGGGGCATTTTAGGCTCTTGAAGAAGCTTGGTTTCGGGGACATTGGTAGTGTATACTTGGCCGAGCTTAGAGGGATGGGGTGCTTGTTCGCAATGAAGGTGATGGATAAAGGCATGTTGGCTGGAAGGAAGAAATTAGCCAGAGTTCAGACTGAGAGGGACATTTTGGGTTTGTTGGACCATCCTTTCCTCCCAACCCTTTATTCCCATTTTGAGACACAGAAATTTTCTTGCTTGCTTATGGAGTTTTGCAGTGGTGGGGATCTTCATACGCTACGGCAGCGGCAGCCCGGCAAGCATTTTACAGAGCAAGCTGTGAGGTTTTATGTTTCTGAAGTGCTTCTTGCTCTTGAGTATCTACACATGATGGGAGTGGTGTACCGAGACTTAAAGCCTGAAAATGTACTGGTGAGGGAGGACGGCCATATCATGCTCTCTGATTTTGACTTGTCATTAAGATGCTGTGTGAGTCCCACCCTTGTTCAGTCCAGTAAAGAACCATCTTGTCAGATATCCTCCTACTGTATCCAGCCATCATGCATTGATCCAGCATGCAAATTACCTGTTTGTGTGGAGCCTTCATGCTTGCAGCCTTCTTGCTTCAGACCGCAATTTTTCAACTCCAAAAAGGCTAAAGGAAAGAGTGAAAAACAAGGCTTTGCGCATTCAGATTCATTTCCAGTACTTATTGCTGAGCCAACCAATGCCCGGTCTATGTCATTTGTTGGGACTCATGAGTATTTAGCTCCTGAGATTATAAGAGGTGAAGGCCATGGAAGTGCTGTGGATTGGTGGACATTTGGTGTTTTCTTGTATGAGTTATTGCATGGGAGAACGCCATTTAAAGGCAATGGAAACCGAGAGACGTTGTTTAATGTTGTTAGTCAGCCTCTCAAATTTCCTGAGGGGTCAAGCATCAGTTTTGCTGCAAAGGATTTGATAAGGGGATTGCTAGTAAAAGACCCGCAAAAGAGGCTTGGCATCAAAAGAGGTGCCACAGAGGTCAAACAGCATCCATTCTTTGAGAGTATTAACTGGGCTCTTATTCGCAGCATCCATCCCCCTGAGATTCCAAAACCAGTTGATCTTGCATTTTTGAATCACACATCAAAGTCATCATCAGTGCCTCCAAATGACAAAGGTGCTACTGATTCAGACAGGTCCTCAGATCCTTACTTGGATTTTGAATTCTTTTAG 1467 0.4431 MSLCSSSVSASNSVSSSKMSNSNLETHRSTESMTDCDGSYKSSSGCVSNSNSYDANEASFRSFCSSKPHKGNDIRWDAIQCAIAKDGELGLGHFRLLKKLGFGDIGSVYLAELRGMGCLFAMKVMDKGMLAGRKKLARVQTERDILGLLDHPFLPTLYSHFETQKFSCLLMEFCSGGDLHTLRQRQPGKHFTEQAVRFYVSEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCCVSPTLVQSSKEPSCQISSYCIQPSCIDPACKLPVCVEPSCLQPSCFRPQFFNSKKAKGKSEKQGFAHSDSFPVLIAEPTNARSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGVFLYELLHGRTPFKGNGNRETLFNVVSQPLKFPEGSSISFAAKDLIRGLLVKDPQKRLGIKRGATEVKQHPFFESINWALIRSIHPPEIPKPVDLAFLNHTSKSSSVPPNDKGATDSDRSSDPYLDFEFF 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1791 488 FunFam serine/threonine-protein kinase D6PK-like 178 245 - -
Glsi12g1791 488 MobiDBLite consensus disorder prediction 458 488 - -
Glsi12g1791 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Glsi12g1791 488 MobiDBLite consensus disorder prediction 1 36 - -
Glsi12g1791 488 Pfam Protein kinase domain 95 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1791 488 Pfam Protein kinase domain 328 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1791 488 FunFam serine/threonine-protein kinase D6PK-like 326 449 - -
Glsi12g1791 488 Gene3D Transferase(Phosphotransferase) domain 1 325 449 - -
Glsi12g1791 488 ProSiteProfiles Protein kinase domain profile. 94 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1791 488 Gene3D Transferase(Phosphotransferase) domain 1 174 243 - -
Glsi12g1791 488 PANTHER FLIPPASE KINASE 1-RELATED 11 454 - -
Glsi12g1791 488 SUPERFAMILY Protein kinase-like (PK-like) 69 464 IPR011009 -
Glsi12g1791 488 Gene3D Phosphorylase Kinase; domain 1 93 173 - -
Glsi12g1791 488 MobiDBLite consensus disorder prediction 473 488 - -
Glsi12g1791 488 FunFam Serine/threonine-protein kinase D6PK-like 92 177 - -
Glsi12g1791 488 CDD STKc_phototropin_like 93 454 - -
Glsi12g1791 488 SMART serkin_6 94 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1791 488 MobiDBLite consensus disorder prediction 458 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1791 Glsi-ChrGlsi12 34025235 34027339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1791 5 488 AGC Kinase Gene Family AT5G40030 73.045 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Glsi12g1791 Pkinase 1.6e-36 CL0016