LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1778	ATGGGATTTGGGAATAATGCAATTCAGGCTGGGAGTTTGGATGTGGGCAAGTCTCAGGGAAGGAAGAAGAAAGATGGTACAAAGAAGGAGAGTGGATGTTGGGATAAATTCAGTTGCATCGGAAGCTGCATACCTTCAAGATCAAAGATTGATACCTCCATAAGCGGCACTAGTACCCATAATGTGGAAAACAAAAATATGAATGTGAAAAACAAAGACCAAACAGTTGCCCCTCCAGGGTCCTCTACAACTACGAGTAATGCAGGAAGTATTCCCTCCACTCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGGTTGAGAAAATTCACATTCATTGAGCTCAAATTGGCAACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGTTGTGTTTTCAAGGGTTGGATAGAGGAGAATGGAACTGCACCCGTCAAACCAGGTACTGGGCTTACCGTCGCAGTGAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCTGAAATAAACTTTCTTGGTGATCTTGTGCATCCTAACCTGGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTATGAGTTCATGCCCCGAGGAAGTTTAGAGAACCATCTCTTTAGAAAAGGGCCCTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGAGCTGCAAAAGGTCTAGCCTTTCTTCATGAAGAAGCTCAGAGGCCCGTAATATATCGTGATTTCAAGACTTCTAATATTCTATTAGATGCGGAATACAATGCCAAGCTCTCTGATTTTGGACTTGCTAAAGATGGTCCTGAGAGTGGAAAGACCCATGTATCAACTAGAGTTATGGGAACATATGGTTATGCAGCTCCAGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTACAGTTTTGGGGTAGTTCTTCTTGAAATGCTTACTGGACGTCGATCGATTGATAAAAGGAGACCAAATGGAGAACACAACCTGGTGGAATGGGCAAGACCTGTACTTGGAGACCGGAGGATGTTCTACCGAATAATTGATCCTCGCCTTGAAGGTCACTTCTCAGTTAAAGGTTCACAGAAAGTCGCCCAGTTGGCTGCTCAATGCCTTAGCCGTGATCCAAAATCTAGACCTATGATGAGTGAAGTTATTCAAGCTCTGAAGCCTTTGCCAAACCTTAAGGATATGGCTATTTCATCTCATTACTTCCAGGTCTCACGGGTAGATCGTACTATGTCCATGCCAAATCCTAAAAATGGTATAAAAACACAGTTAGCGTCTGTACCAAGGAAAGGTCAACCTATGAGGACCTTGTCGAGTCCAAATGGTCCATATGGTTCTCCATATCATCATTATTCCAAGTCACCAAAACCTAAGGGGTGA	1431	0.4305	MGFGNNAIQAGSLDVGKSQGRKKKDGTKKESGCWDKFSCIGSCIPSRSKIDTSISGTSTHNVENKNMNVKNKDQTVAPPGSSTTTSNAGSIPSTPKFSEELKVSSRLRKFTFIELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEINFLGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRKGPLPLPWSIRMKIALGAAKGLAFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPESGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKRRPNGEHNLVEWARPVLGDRRMFYRIIDPRLEGHFSVKGSQKVAQLAAQCLSRDPKSRPMMSEVIQALKPLPNLKDMAISSHYFQVSRVDRTMSMPNPKNGIKTQLASVPRKGQPMRTLSSPNGPYGSPYHHYSKSPKPKG	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1778	476	MobiDBLite	consensus disorder prediction	17	31	-	-
	Glsi12g1778	476	FunFam	Serine/threonine-protein kinase BIK1	90	207	-	-
	Glsi12g1778	476	MobiDBLite	consensus disorder prediction	427	476	-	-
	Glsi12g1778	476	ProSitePatterns	Protein kinases ATP-binding region signature.	128	160	IPR017441	GO:0005524
	Glsi12g1778	476	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	252	264	IPR008271	GO:0004672\|GO:0006468
	Glsi12g1778	476	SUPERFAMILY	Protein kinase-like (PK-like)	96	403	IPR011009	-
	Glsi12g1778	476	MobiDBLite	consensus disorder prediction	53	95	-	-
	Glsi12g1778	476	MobiDBLite	consensus disorder prediction	1	31	-	-
	Glsi12g1778	476	Gene3D	Phosphorylase Kinase; domain 1	102	207	-	-
	Glsi12g1778	476	PANTHER	OS01G0588500 PROTEIN-RELATED	75	406	-	-
	Glsi12g1778	476	Gene3D	Transferase(Phosphotransferase) domain 1	208	424	-	-
	Glsi12g1778	476	Pfam	Protein tyrosine and serine/threonine kinase	126	403	IPR001245	GO:0004672\|GO:0006468
	Glsi12g1778	476	CDD	STKc_IRAK	128	406	-	-
	Glsi12g1778	476	FunFam	Probable serine/threonine-protein kinase PBL8	208	423	-	-
	Glsi12g1778	476	ProSiteProfiles	Protein kinase domain profile.	122	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g1778	Glsi-ChrGlsi12	33902559	33906541	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1778	70	418	Glycoside Hydrolase	AT3G07070	51.105	4.26e-116	345

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Glsi12g1778		Pkinase	2.9e-47	CL0016