Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1773 ATGTCAGGGTGTGCCACTAAAGTTAGCTTAATCTTGTTGGCTACTTTAGCCATTACTATTCCATGCCTAGAGGCTGGCATCGGTGAGTTTGACGATTATCTTCGAAAACAATCCGAGGAAGCCCGCAGAGTAGCTCTTGAAGCCTACGAGCCCGACCCTCATAATGTTACGTCGGAGCTTAATTTACACGTTCACATGGCGTTGCAGGGGACTAACAGCACGAGGAGGGACCTGAGGCTGAAATACAAGGGACCATGCGTGGCCACCAACCCAATTGACCGTTGCTGGCGGTGCAGGCCAGACTGGGCCTCGGACCGCATGAGGTTAGCGAAATGTGTAAAGGGTTTCGGGCGGAAGACAACCGGAGGACTAGGCGGCCCCATTTACGTGGTGACAGATCCCTCGGACAACGACCTAGTGAACCCGAGACGCGGGACTCTTCGGTTCGGAGCTATACAGAAGGGGCCATTGTGGATAATATTCGGACGGAGTATGACCATAAGATTGCAGCAGGAATTGTTAATTGCCTCAGACAAGACCATCGACGGTCGTGGAGCCCATGTGTATATTACCGGAGGTGCTGGCTTGTCTATGCAGTTTGTTTCCAATGTGATCATCCATAATCTTCGCATTCACAATGTCAAATCCGCGAGTGGTGGCCTTATTAGGGATTCCGTGAATCACGTGGGGGTAAGAACTAGGAGTGATGGGGATGCCATCTCCATTTTTGGCTCCTCAAACGTATGGGTCGACCATGTTTCTATGTCCAGAGCCGAGGATGGGCTTGTCGACGTCATCCAAGGTTCCACCGGCGTAACCATTTCCAACTGCCACATGACCCAGCATAATGATGTGATGCTGTTTGGAGCTAGTGATATATACTCCGGGGACAAGATAATGCAGGTAACAGTGGCATTCAACCATTTTGGACAGGGATTGATACAGAGGATGCCCAGATGTAGATGGGGTTTCGTCCATGTTGTGAACAATGACTACACTCACTGGCTGATGTATGCCATTGGGGGTAGCGCAGGCCCAACCATTCTTAGCCAGGGCAATCGTTTTATTGCTCCCAACGATTTAGCCGCCAAGGAGGTCACACACAGAGACTATGCACCAGCATCAGTGTGGAGTAAATGGAAATGGACATCAGAGCTGGATCTGTTCATGAACGGGGCAACCTTTGTTCAGTCTGGAGGGCCTCCGAATAAGAGGCAATTCAAAAAAGGCAACCTCATGAAACCCAGAGCCGGAACTGCCGTCACAAGGCTTTCAAGGTTTTCAGGTGTCCTTAATTGCAAAGTGGGCCAGCCTTGTTAG 1320 0.5045 MSGCATKVSLILLATLAITIPCLEAGIGEFDDYLRKQSEEARRVALEAYEPDPHNVTSELNLHVHMALQGTNSTRRDLRLKYKGPCVATNPIDRCWRCRPDWASDRMRLAKCVKGFGRKTTGGLGGPIYVVTDPSDNDLVNPRRGTLRFGAIQKGPLWIIFGRSMTIRLQQELLIASDKTIDGRGAHVYITGGAGLSMQFVSNVIIHNLRIHNVKSASGGLIRDSVNHVGVRTRSDGDAISIFGSSNVWVDHVSMSRAEDGLVDVIQGSTGVTISNCHMTQHNDVMLFGASDIYSGDKIMQVTVAFNHFGQGLIQRMPRCRWGFVHVVNNDYTHWLMYAIGGSAGPTILSQGNRFIAPNDLAAKEVTHRDYAPASVWSKWKWTSELDLFMNGATFVQSGGPPNKRQFKKGNLMKPRAGTAVTRLSRFSGVLNCKVGQPC 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1773 439 Gene3D - 89 432 IPR012334 -
Glsi12g1773 439 Pfam Pectate lyase 173 355 IPR002022 -
Glsi12g1773 439 SUPERFAMILY Pectin lyase-like 90 430 IPR011050 -
Glsi12g1773 439 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Glsi12g1773 439 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Glsi12g1773 439 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Glsi12g1773 439 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Glsi12g1773 439 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Glsi12g1773 439 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Glsi12g1773 439 PRINTS Pollen allergen Amb family signature 410 433 IPR018082 -
Glsi12g1773 439 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Glsi12g1773 439 Pfam Pectate lyase, N terminus 27 78 IPR007524 GO:0030570
Glsi12g1773 439 PANTHER PECTATE LYASE 18-RELATED 41 437 IPR045032 GO:0030570
Glsi12g1773 439 SMART amb_all 164 361 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1773 Glsi-ChrGlsi12 33880980 33882488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1773 10 439 Polysaccharide Lyase AT5G15110 53.664 0.0 522