Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1772 ATGGAGATGATGATAAAGAGTGAAGAGAGCACAAGAAGGAATCGAATGTGCATGACAGAAGCTGAATCCCAAGGAAATCGGTGTGTCAAGAGACGACGAAGAGAGCCTGCTGCAGCTGCCCTTAATTGCAATGATAATCGAAGTCGGAATCAACAGCAGCTGCCACAGCCACAAGTTGATCAAAATTCTACCACCAACACTGTCAAAAGAAGTTCAAGATTTCGCGGTGTCAGCAGACATCGATGGACGGGTCGATTTGAAGCTCACTTGTGGGACAAGCTCTCTTGGAACGTAACACAGAAGAAGAAAGGGAAGCAAGGGGCTTACGACGAAGAAGAATCTGCAGCCAGAGCATACGATTTAGCTGCACTTAAGTACTGGGGAACATCAACTTTCACTAATTTTCCGATAACGGATTACAATAAAGAAATAGAGACTATGCAGACAATGACCAAAGAGGAGTACTTGGCTACCTTAAGAAGAAAGAGCAGTGGCTTTTCAAGAGGCGTATCAAAGTACAGGGGTGTTGCAAGGCATCACCACAATGGTAGATGGGAAGCAAGGATAGGCAGGGTTTTCGGGAACAAATATCTCTACCTAGGAACTTACGGCACCCAAGAAGAAGCAGCTCGTGCTTATGACATAGCGGCCATTGAGTACAGAGGGGTCCATGCTGTAACCAACTTTGATTTGAGCACTTATATAAGATGGTTGAAGCCTACAAGAGACAACATCCCAGAAGCAACACTTGAATCACAGGTGGTAGCAGAGGCTAAGACAGTGAAATCCCCATCTATCTATACCTCAACAGAGGAGTACAAATCCTTGGCCTTTCACAGTAATTCTCTCACAGATTACCTGAACTCTCCTCAAACGCAAGATGCCTTTGAAAACAAAACCTCTCTGACCTCGAGCAATAAGACATCTTCTCCCACTGCACTTGGCCTCCTTCTACGATCTTCAATATTTAGAGAATTAGTAAAAAAGAATTCGAATATATCAGGAGATGAAACTGATGGAGAAGACACAAGGGATCAACAGCAACAGGCTGGTGACGATGAGTTGGGTGGGATCTTCATTGATGGAATTGGCGATGTCCCATTTGTCTGCGACTCGAACAGATACAACTTAGAATTCCAAGAAGGAGACCTCCAGTCTCTTTTTGTGAACAGAGATGTGTAG 1182 0.4442 MEMMIKSEESTRRNRMCMTEAESQGNRCVKRRRREPAAAALNCNDNRSRNQQQLPQPQVDQNSTTNTVKRSSRFRGVSRHRWTGRFEAHLWDKLSWNVTQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPITDYNKEIETMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDIAAIEYRGVHAVTNFDLSTYIRWLKPTRDNIPEATLESQVVAEAKTVKSPSIYTSTEEYKSLAFHSNSLTDYLNSPQTQDAFENKTSLTSSNKTSSPTALGLLLRSSIFRELVKKNSNISGDETDGEDTRDQQQQAGDDELGGIFIDGIGDVPFVCDSNRYNLEFQEGDLQSLFVNRDV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1772 393 SMART rav1_2 172 236 IPR001471 GO:0003700|GO:0006355
Glsi12g1772 393 SMART rav1_2 73 142 IPR001471 GO:0003700|GO:0006355
Glsi12g1772 393 PRINTS Ethylene responsive element binding protein signature 212 232 IPR001471 GO:0003700|GO:0006355
Glsi12g1772 393 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Glsi12g1772 393 ProSiteProfiles AP2/ERF domain profile. 73 136 IPR001471 GO:0003700|GO:0006355
Glsi12g1772 393 ProSiteProfiles AP2/ERF domain profile. 172 230 IPR001471 GO:0003700|GO:0006355
Glsi12g1772 393 MobiDBLite consensus disorder prediction 43 72 - -
Glsi12g1772 393 MobiDBLite consensus disorder prediction 1 76 - -
Glsi12g1772 393 SUPERFAMILY DNA-binding domain 171 232 IPR016177 GO:0003677
Glsi12g1772 393 FunFam AP2-like ethylene-responsive transcription factor 171 232 - -
Glsi12g1772 393 MobiDBLite consensus disorder prediction 1 16 - -
Glsi12g1772 393 Pfam AP2 domain 171 222 IPR001471 GO:0003700|GO:0006355
Glsi12g1772 393 Pfam AP2 domain 72 128 IPR001471 GO:0003700|GO:0006355
Glsi12g1772 393 CDD AP2 171 232 IPR001471 GO:0003700|GO:0006355
Glsi12g1772 393 SUPERFAMILY DNA-binding domain 72 137 IPR016177 GO:0003677
Glsi12g1772 393 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 45 298 - -
Glsi12g1772 393 Gene3D AP2/ERF domain 171 232 IPR036955 GO:0003700|GO:0006355
Glsi12g1772 393 Gene3D AP2/ERF domain 72 138 IPR036955 GO:0003700|GO:0006355
Glsi12g1772 393 CDD AP2 72 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1772 Glsi-ChrGlsi12 33876822 33878876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1772 69 234 AP2-EREBP Transcription Factor Family AT5G17430 68.639 2.42e-78 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi12g1772 AP2 2e-09 CL0081