Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1759 ATGAATAAAAATAGGATTCTCTGTTTGCATTCTTTAAACTCTGCAAAGTTCGTGTCTTTGTATCTTACTGACTGTGACATTTGCGTGGGTAGCTCAAACCAGAGTGACAATGCCGAATATAAAGTGCATTTTTTTCACGTTGAACTGACCCGTTTCTCATATTCGACTCCTGGGCTTTCCATATCTTCAAATTGCGACTTTCGTATCTATGCTGCATACAAATTGACTCTGGTAAATGTGTATCTAGTATTGAGTTCTGAAGATATGGGATTGGGTCCTGATGCTGAGAAGGTTCGTGCTTGGGATGTGGGAAAATCAAAGGGAAGGAAGAAAAAGGATGTCGAACCTGAACGTTGGGGATGCTGGATGAAATTGAGGTTTATTAGAAGTTGCATGTCTTTGAAGTCCAAAGTGGACGGCTCCATAACTGGCACTAGTACACCCGATGGTATTCTTTCGTTGGTTCTTGAAGGCCATTCTATGCTTCAAAAAGACACAGAAACTTATAATGGTTGGAGTTGGACCGGATCCTTAATGGTTTCATATGGCAAATTGAGTTATCGACCTTGGGAATTATGTTTATTTGCATATGGAAAGGCTTGTGGCCGAAGAATATGCTGTATGACCTATGTGGTTCCTTTGGCTCGTATTACAGAAATTAAATATACAAAAGATACTAGAAGAAACAAACTGGTTCCCCCGGTTTTGTCGTCTTCAACCAACAGCAATTCAGGAACTGCTCCATCCACCCCCAACATAAATGACGAAATAAAAATTTCTTCCAAGCTTCGAAAGTTTTCCTTTAATGAGCTTAGGCTGGTCACAAGGAATTTTAGACCTGACAGTCTTCTTGGTGAGGGTGGCTTTGGTTGTGTATTCAAAGGTTGGATTAGTCAGAATGTTATCTCTCCAGCAAAACCTGGTATGGGGCTTGCAGTTGCTGTAAAGACTCTCAACCATGATGGACTTCAGGGCCATAGAGAATGGCTTGCTGAAGTTAATTATCTTGGAGAACTCCTTCATCCAAATCTAGTTAAATTAATAGGTTACTGCATTGAGGACGATCAAAGGCTACTAGTATATGAGTTTATGCCTCGAGGAAGCTTGGAGAATCACCTATTTAGGAGATCTTTGCCTCTTCCATGGTCCATCAGAATGAAAATTGTACTTGGCGCTGCAAAGGGCCTTGCATTTCTGCATGAGGAAACTGAAAAGCCAGTGATCTTTCGGGACTTTAAAACATCTAATATCTTGTTGGATGCGGACTACAATGCAAAACTTTCTGATTTTGGGCTTGCCAAAGATGGTCCAGAGGGAGACTTAACTCATGTGTCTACTCGAGTGATGGGAACCTATGGATATGCAGCTCCTGAGTATGTGATGACAGGACATCTTACTTCTAAGAGCGATGTATATAGTTTTGGTGTAGTTCTACTTGAGTTATTGACTGGCAGAAGATCCATGGATAAAAATCGGCCTAATGGGGAGCATAACTTGGTGGAATGGGCGCGGCCGCAACTTGTGGACAGACGAAGATTCTATAAACTGATAGATCCTCGACTTGAAGGTCATTTCTCAGTCAAAGGTGCTCAAAAGGCATTTCAGTTGGCTGCTCACTGCCTTAGCCGTGACCCAAAAGCAAGACCCCTGATGAGTGAGGTTGTTCAAAAGTTAAAGCCTTTGGCCGACCTCAATGACATGGCTTGCTCGTCACCCTCATTCCAGGCCATGCTAGCGGAGCGCGCCCACAGAACACAGTCTGGCTTCTCAAGGAATGCCTCATCGTCAAGGAGCATACCAAATAGTCTGCATGCCTCTCCATGTCGCCCAAACTATCCTCTTCCGTCTCCCAGTCCTAATGCGAGACGCCCGTCCCATTAA 1881 0.4327 MNKNRILCLHSLNSAKFVSLYLTDCDICVGSSNQSDNAEYKVHFFHVELTRFSYSTPGLSISSNCDFRIYAAYKLTLVNVYLVLSSEDMGLGPDAEKVRAWDVGKSKGRKKKDVEPERWGCWMKLRFIRSCMSLKSKVDGSITGTSTPDGILSLVLEGHSMLQKDTETYNGWSWTGSLMVSYGKLSYRPWELCLFAYGKACGRRICCMTYVVPLARITEIKYTKDTRRNKLVPPVLSSSTNSNSGTAPSTPNINDEIKISSKLRKFSFNELRLVTRNFRPDSLLGEGGFGCVFKGWISQNVISPAKPGMGLAVAVKTLNHDGLQGHREWLAEVNYLGELLHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIVLGAAKGLAFLHEETEKPVIFRDFKTSNILLDADYNAKLSDFGLAKDGPEGDLTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLELLTGRRSMDKNRPNGEHNLVEWARPQLVDRRRFYKLIDPRLEGHFSVKGAQKAFQLAAHCLSRDPKARPLMSEVVQKLKPLADLNDMACSSPSFQAMLAERAHRTQSGFSRNASSSRSIPNSLHASPCRPNYPLPSPSPNARRPSH 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1759 626 SUPERFAMILY Protein kinase-like (PK-like) 252 558 IPR011009 -
Glsi12g1759 626 MobiDBLite consensus disorder prediction 610 626 - -
Glsi12g1759 626 Gene3D Transferase(Phosphotransferase) domain 1 364 576 - -
Glsi12g1759 626 MobiDBLite consensus disorder prediction 585 626 - -
Glsi12g1759 626 Pfam Protein tyrosine and serine/threonine kinase 282 558 IPR001245 GO:0004672|GO:0006468
Glsi12g1759 626 CDD STKc_IRAK 284 561 - -
Glsi12g1759 626 FunFam Probable serine/threonine-protein kinase PBL8 364 577 - -
Glsi12g1759 626 FunFam Serine/threonine-protein kinase BIK1 245 363 - -
Glsi12g1759 626 ProSiteProfiles Protein kinase domain profile. 278 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1759 626 PANTHER OS01G0588500 PROTEIN-RELATED 242 561 - -
Glsi12g1759 626 Gene3D Phosphorylase Kinase; domain 1 253 363 - -
Glsi12g1759 626 ProSitePatterns Protein kinases ATP-binding region signature. 284 316 IPR017441 GO:0005524
Glsi12g1759 626 MobiDBLite consensus disorder prediction 585 605 - -
Glsi12g1759 626 MobiDBLite consensus disorder prediction 232 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1759 Glsi-ChrGlsi12 33775517 33786275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1759 243 574 Glycoside Hydrolase AT3G07070 51.884 8.89e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi12g1759 PK_Tyr_Ser-Thr 2.7e-45 CL0016