Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1758 ATGATACTAACATCCACTTCTACTATGGCCTTCCCACCTTCTCACAGCTTCCTCTTTCAAACCCATGAAGATCATGACCACCTTCCTTCCACCTCTCTCAACGCCTTCCCCTCGTTTCAAGGGGGTGCACCTTTCATGATGAAGCGATCCATGTCATTTTCAGGCATCGGAAATAAGTGCAATGAAGTGCATGGAGATGAGGAGTTTTCAGATGAGGGATCCCAGATGGGCGAGAAGAAGAAGAGGCTGAACTTGGAACAGGTGAAGGCCCTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAGCCAGAAAGGAAAATGCAGCTGGCCAAGGCTCTAGGTCTGCAGCCAAGACAGATCGCCATATGGTTTCAGAATAGGAGAGCAAGATGGAAAACCAAGCAACTTGAGAAGGAATATGAAGTACTCAAGAGACAGTTCGAAGCGGTAAAGGCTGACAACGATGCCCTTAAGGCGCAGAACCACAAACTACATACAGAGCTACAAGTTTTAAAAGGTAAAGATTGCTGTGAAGCCGGAACAATCAGCCTAAAGAAAGAAACTGATGTTTGTTGGAGCAATGGAAGCGATAATAGCTCAGATGTTAACTTGGACCTCTCAAGGACTCTAGTTATAAACACACCAGTATCTTCAGTACAGAACGGCAAAAACCTTCTTCCAACTTCCATTAAGCCCACAAGCATAACCCAACTCCTCCAATGTTCATCAAGATCAGAACTTCAAGATGAAAGCTTCAGTAACATGTTTCACAGCATTGATGAGCAGCAGAATTTCTGGCCTTGGCCAGAGCAGCACCATTTTCATTGA 828 0.4517 MILTSTSTMAFPPSHSFLFQTHEDHDHLPSTSLNAFPSFQGGAPFMMKRSMSFSGIGNKCNEVHGDEEFSDEGSQMGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKRQFEAVKADNDALKAQNHKLHTELQVLKGKDCCEAGTISLKKETDVCWSNGSDNSSDVNLDLSRTLVINTPVSSVQNGKNLLPTSIKPTSITQLLQCSSRSELQDESFSNMFHSIDEQQNFWPWPEQHHFH 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1758 275 SMART HOX_1 77 138 IPR001356 GO:0003677
Glsi12g1758 275 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Glsi12g1758 275 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Glsi12g1758 275 Coils Coil 126 174 - -
Glsi12g1758 275 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Glsi12g1758 275 Gene3D - 71 148 - -
Glsi12g1758 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 268 IPR045224 GO:0003700
Glsi12g1758 275 FunFam Homeobox-leucine zipper protein ATHB-13 71 138 - -
Glsi12g1758 275 CDD homeodomain 79 135 IPR001356 GO:0003677
Glsi12g1758 275 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Glsi12g1758 275 SUPERFAMILY Homeodomain-like 69 136 IPR009057 -
Glsi12g1758 275 Pfam Homeobox associated leucine zipper 134 174 IPR003106 GO:0006355|GO:0043565
Glsi12g1758 275 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1758 Glsi-ChrGlsi12 33773608 33775222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1758 9 270 Homeobox Transcription Factor Family AT3G01220 50.923 4.27e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi12g1758 Homeodomain 2.4e-15 CL0123