Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1754 ATGTCTAGCAGAAGGTCCAGGCAGCAGTCGGGGTCTACAAGGATCTCCGATGACCAAATCATCGAACTTGTTGCCAAGTTGCGTCAACTTGTTCCTGAGATTCGCGATAGGCGCTCAGATAAGGTATCTGCTTCTAAGGTCCTGCAAGAGACCTGCAACTACATCAGAAGCTTAAACAAAGAAGTGGACGATTTAAGCCAGCGACTGTCTCAGTTGTTGGCCACAATTGATGCTGATAGTCCTGAGGCTGCTATCATTAGGAGTCTAATTAACCAGTAA 279 0.4659 MSSRRSRQQSGSTRISDDQIIELVAKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLNKEVDDLSQRLSQLLATIDADSPEAAIIRSLINQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1754 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Glsi12g1754 92 Coils Coil 48 75 - -
Glsi12g1754 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Glsi12g1754 92 Pfam Helix-loop-helix DNA-binding domain 22 58 IPR011598 GO:0046983
Glsi12g1754 92 Gene3D - 3 84 IPR036638 GO:0046983
Glsi12g1754 92 FunFam Transcription factor ILI6 5 87 - -
Glsi12g1754 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Glsi12g1754 92 CDD bHLH_AtPRE_like 9 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1754 Glsi-ChrGlsi12 33755900 33756544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1754 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 72.500 2.78e-36 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi12g1754 HLH 4.8e-05 No_clan