Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1748 ATGGCTGGCAGAGGCGATAAAAAGAAAATGAACTTGAATTCCATAAAAATCCGGTTGAGTTTAGAGCACAGCTTCTTCTCAGTTCTCACTGCCAAAGTCACCGTGATTTTCGTCGAAACACACACAGTCTCTCTCTCTCTCTCCATTAGAGTCATCCTGAAAGAACGGCTCAAGCTTCGGAAGAAGATCCCTTCTCAGGAGGCATATAATGGCTTTGGTCTAATTGCATTTGTACACTCGATACCGGAGCAAGCTCTAAAATACTATAAGTCTCTTTCTCTCAGCGCCTGGTTGTTGAAGAAGAAATTCAGAGGGAAAAAGGACATGGAGGAGAGGAATGAAATGGATAAGATTGATGATGTGTTGATGCCAGGCTTTCGGTTTCACCCCACAGACGAAGAGCTTGTTGATTTTTACCTCAGGAGAAAGATTCAGCAGAAATCTCTTCCTATTGAACTTATTAAGCAAGTAGATATTTACAAATATGATCCATGGGATCTTCCAAAAGAGCTAGCAAGTACTGGCGAGAAAGAATGGTACTTCTACTGTCCAAGGGACCGGAAATACAGGAACAGTGCACGCCCAAATCGAGTGACAAGAGCTGGGTTTTGGAAGGCCACTGGAACCGACCGGCCTATATACTCCTCAGTAGGAAAGTGCATCGGTTTGAAGAAGTCTCTTGTGTTCTACAGAGGCCGAGCCGCCAAAGGGATCAAAACTGACTGGATGATGCATGAATTTCGGCTGCCTTCTATATCAGATTCAGCTCCTCCCAAGAAGCCCTCAGACAAAAGCCTTCCGCTAAGCGATTCATGGGCAATTTGTAGGATATTCAAGAAAACTAACTCAATGTCCATGGCACAGAAAGCTTTATCTCACCCTTGGATCACTCAGTTACCTGAGAGCATGGTATCTGATATTCTGACGCAGGGTGCAAACTGCAATCAGTTCAGTTCAGAGAACATCTCTTGCACAACAGAAATAGGATCAGCTTCAGCCAATCAATTTTGCGGTAACAAGCAGATCTCTAGTGTTAATTTCTCAGCTTCAGATATTCCCTCTTACAAGCCCATCTATAGTACAGTATCCAAGTCCCCGCAAATTCCTGTGTCAAACGGAGACATAGCTGACAACTTCATCTTCTCCACGTTCGAATCGTCAGGTCCTGCCAAGTGCGCAGTTGATGCAAGCTCCGTGCTTTTCAACGCTGGCTATGTAGGCTTTGAAGGGCCAAATCAGCAGTCTAGCGTTTTCTCAATTAGTGTACCCCAGGATATACAAGGAAACATGAGCACAGCAACAGTGGCAGATGCAGCACAGCTCAGTAACCCATGGGAAACAGGGCGAGCAATTGGGTTTCCCTTCAGCTTGCCTCCAATTCCAAACGAGGCTTGGAAGGCTCCTCTGCCATGGGACTCACCCCCATGTCCTGCTGAGATGTCCACTGGCTACTCTTCTAGTAAAGGCTGCACTTAA 1476 0.4566 MAGRGDKKKMNLNSIKIRLSLEHSFFSVLTAKVTVIFVETHTVSLSLSIRVILKERLKLRKKIPSQEAYNGFGLIAFVHSIPEQALKYYKSLSLSAWLLKKKFRGKKDMEERNEMDKIDDVLMPGFRFHPTDEELVDFYLRRKIQQKSLPIELIKQVDIYKYDPWDLPKELASTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSVGKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRLPSISDSAPPKKPSDKSLPLSDSWAICRIFKKTNSMSMAQKALSHPWITQLPESMVSDILTQGANCNQFSSENISCTTEIGSASANQFCGNKQISSVNFSASDIPSYKPIYSTVSKSPQIPVSNGDIADNFIFSTFESSGPAKCAVDASSVLFNAGYVGFEGPNQQSSVFSISVPQDIQGNMSTATVADAAQLSNPWETGRAIGFPFSLPPIPNEAWKAPLPWDSPPCPAEMSTGYSSSKGCT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1748 491 Gene3D NAC domain 131 285 IPR036093 GO:0003677|GO:0006355
Glsi12g1748 491 FunFam NAC domain-containing protein 35 131 283 - -
Glsi12g1748 491 Pfam No apical meristem (NAM) protein 124 249 IPR003441 GO:0003677|GO:0006355
Glsi12g1748 491 ProSiteProfiles NAC domain profile. 122 280 IPR003441 GO:0003677|GO:0006355
Glsi12g1748 491 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 120 332 - -
Glsi12g1748 491 SUPERFAMILY NAC domain 121 280 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1748 Glsi-ChrGlsi12 33712046 33715040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1748 108 296 NAC Transcription Factor Family AT5G39820 67.980 5.80e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi12g1748 NAM 5e-37 No_clan