LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1747	ATGCAAAGTCTGTTGGGAGTTTTCTGCAGAATTTTCATGAGATACTATAGTCCTAGAGCAACCAATAAAGCCTGTTCTTCGACTATCTCCCCGGAAAGCTATCAAATTGACTCAAACTTTTCTGAGCCAAAACAAGAGTCTAAAGCAGGATATTCTAAAAGTTTGGAATATACAGATTTGAAGTGTGAAAGGTTTGATTCTGGTTTTAATAGTTTTTCACATTCCAATGGTTCCCAACCACAATCAGAGCCCCAAAGACCCTGTTCCAAAACACTTAACGGCACTGACAATGTCGGTGTTGAAGAAGAGAAGGCGTCTAATTTTGTTTTCAAGTTCCAATATCAAACATGTAAATATCGCAAAGAATTCAACGGAAGGTATAGTGAAAGTTATGATTTTTCCAACAGAGATATGGCTTCTGCAAGCACCAACAGATATGAGTTCATTTTACCCAAGAGTTTCAGCCACTTCATTGAGGACGCAGAGGTTTTAAATTTGACTGTCAAAGAACTATATTTTCGTTCAAACGACGGTCCATTGGAGAAAAAGGATATTAAGAATTCTGGGTTCTTATCCGAGAGTGAGTTGGTGCCAGAAAATTCCGAAGCAGGAGCTGTTTATGCAGAAATACCTGACATTTCCGCAGGAAGAATAGACAAACAGGAAATGACAGAGAAGCTCAAGGCCGCGCCAACTGCAGAACAACCTGACTCCGGGAAAGATCAAGTAAAGAATACCAATAACAACACTCTAGTTGCAGAAATTTCAGCAGCAGATAATTTCGTTTCTGAAGACGACTTCATAGGTTTGAGCTCCGAATCAAATTCTATCAATTCAAACATTGATTTTCTATTTGAAAGTCAATCAAACGGTTCGACGGGCGATGGATTTTTGTACACAGACTTTGGAACTACTATTGGGCTGCACAAGCAGGGAAACGATGATCAAGAAAATGCAGGGTACTTAACAAAAGAAGATTTCGACTTAGAGGAGGATAATAATTCAGAGATTTTGGATGTTGGCTACAAGCCTGATGATTTTGACGAAGAAGATAGAGATACAATGGAAGAGCTTCAGAAATTAGAAGAAGAATGTCAGCTGCAGAATTCAAATATGGCAGACATGGAGAAAATATCTAGGAATAACTTTCATGACAGCATCAATTTCAAACCTGAAGAATTTGATAACCAAGAAAAAAGGTCAATCGATTGTTCAGACGAATCTGCAAAACCCAATTCTCAGAAGCCAACAATTTTGGATCTTGAGAATTCCAACCGGTTTGATACACTGTGGGAACATCAAGATTTAGTCGAACAGATGAAGATGGAGCTGAAGAAGGTGAGAGCCACTGGTCTCCCTACCATTCTTGAGGATTATGAGTTTCCAAGGATAATAGAAGACTTGAAGCCATGGAAGATTGACGAAAAATTCCAACATGGGAGTGTAATAAATGAGCTTCCAAAATTTTACAGGAGTTACAGAGAACGAATGCGAAAATTCGATATCTTAAATTACCAAAAGATGTGCGCTATAGGCTTTGTGCAGTCAAAAGACCCACAGCAATCGTCGTCAAGGTGCAAGACTTCGGCTCCTGCAATCGTATCCCTTATTTCACACAGATTTGGCCTTTGTAGACGTAAAAAAACTGAATTGAACCCAATGAAGAATTTCATTAAAGAATTGTACAGTGATTTGGAAATAGTTTATGTGGGACAGTTGTGCCTTTCTTGGGAACTCCTTCAGTGGGAATACGAGAAGGCCTCGGAGTTATGGGAATCTGACCAATATGGATTACGAAGGTACGATGAAGTGGCAGGCGAGTTTCAACAGTTTCAAGTGCTGCTGTTAAGATTTATGGAGAATGAACCTTTCCAAGGTCCACGGGTTGAAAACTACGTCAAGAATCGCTGTGTTATGCGAAATCTTCTTCAAGTTCCATTAATAAGGGAGGACAAGGCAAAGGATGAAGGGAGATTGAGGAAAAGGAGAGATAATGATGCTATGACATGTGATATGCTAGTAGAGATATTGGAAGAATCAATCAGAACAATTTGGCGTTTCATTAAAGGAGATAAAGATACATCCAGCTTGACTCCTAAAGGTATAAGAGAAACTCAGGTAGAAACTCAGGAAGATTCAGAGCTTCTTGAGGAAGTTCGAGCAGATCTTCATAAGAAATCCCTAGAGCCGTCAGATCTAGGGTTTGTTCGACCCGTAAAAAGACTACATTTACACACTCCCTGTCCCTCCTCGTCGTTCTCACTAGCCTTATTCACTATCTGCGAAGACAGAGGAGGAGCTGATAATCACTTCAAAATGGTGCAGCGGCTTACGTATCGTAAGCGCCATAGCTACGCCACCAAATCCAACCAGCACAGGGTTGTCAAAACCCCTGGTGGGAAGTTGGTGTATCAGACTACAAAGAAGAGAGCAAGCGGACCGAAGTGTCCTGTTACTGGGAAGAGGATTCAAGGGATTCCACACTTGAGACCTGCTGAATACAAGAGATCTAGATTGCCTAGAAACCGTCGGACAGTCAATCGAGCTTATGGAGGTGTTTTATCTGGAGGAGCTGTCAGAGAAAGAATAATCCGGGCTTTCTTGGTGGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAGATCCAGAAGGCAAAAGAAAAGCAAGCATCAAAGAGTTAA	2679	0.4065	MQSLLGVFCRIFMRYYSPRATNKACSSTISPESYQIDSNFSEPKQESKAGYSKSLEYTDLKCERFDSGFNSFSHSNGSQPQSEPQRPCSKTLNGTDNVGVEEEKASNFVFKFQYQTCKYRKEFNGRYSESYDFSNRDMASASTNRYEFILPKSFSHFIEDAEVLNLTVKELYFRSNDGPLEKKDIKNSGFLSESELVPENSEAGAVYAEIPDISAGRIDKQEMTEKLKAAPTAEQPDSGKDQVKNTNNNTLVAEISAADNFVSEDDFIGLSSESNSINSNIDFLFESQSNGSTGDGFLYTDFGTTIGLHKQGNDDQENAGYLTKEDFDLEEDNNSEILDVGYKPDDFDEEDRDTMEELQKLEEECQLQNSNMADMEKISRNNFHDSINFKPEEFDNQEKRSIDCSDESAKPNSQKPTILDLENSNRFDTLWEHQDLVEQMKMELKKVRATGLPTILEDYEFPRIIEDLKPWKIDEKFQHGSVINELPKFYRSYRERMRKFDILNYQKMCAIGFVQSKDPQQSSSRCKTSAPAIVSLISHRFGLCRRKKTELNPMKNFIKELYSDLEIVYVGQLCLSWELLQWEYEKASELWESDQYGLRRYDEVAGEFQQFQVLLLRFMENEPFQGPRVENYVKNRCVMRNLLQVPLIREDKAKDEGRLRKRRDNDAMTCDMLVEILEESIRTIWRFIKGDKDTSSLTPKGIRETQVETQEDSELLEEVRADLHKKSLEPSDLGFVRPVKRLHLHTPCPSSSFSLALFTICEDRGGADNHFKMVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS	892

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1747	892	MobiDBLite	consensus disorder prediction	72	96	-	-
	Glsi12g1747	892	ProSitePatterns	Ribosomal protein L34e signature.	787	800	IPR018065	-
	Glsi12g1747	892	PANTHER	OS09G0413600 PROTEIN	88	727	-	-
	Glsi12g1747	892	Gene3D	-	811	892	-	-
	Glsi12g1747	892	MobiDBLite	consensus disorder prediction	226	246	-	-
	Glsi12g1747	892	Pfam	Protein of unknown function (DUF1666)	563	728	IPR012870	-
	Glsi12g1747	892	PRINTS	Ribosomal protein L34 signature	785	798	IPR008195	GO:0003735\|GO:0005840\|GO:0006412
	Glsi12g1747	892	PRINTS	Ribosomal protein L34 signature	798	815	IPR008195	GO:0003735\|GO:0005840\|GO:0006412
	Glsi12g1747	892	PRINTS	Ribosomal protein L34 signature	816	826	IPR008195	GO:0003735\|GO:0005840\|GO:0006412
	Glsi12g1747	892	PRINTS	Ribosomal protein L34 signature	838	860	IPR008195	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g1747	Glsi-ChrGlsi12	33703466	33708813	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1747	773	891	Cytoplasmic Ribosomal Protein Gene Family	AT1G69620	91.597	1.37e-66	216

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