Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1747 ATGCAAAGTCTGTTGGGAGTTTTCTGCAGAATTTTCATGAGATACTATAGTCCTAGAGCAACCAATAAAGCCTGTTCTTCGACTATCTCCCCGGAAAGCTATCAAATTGACTCAAACTTTTCTGAGCCAAAACAAGAGTCTAAAGCAGGATATTCTAAAAGTTTGGAATATACAGATTTGAAGTGTGAAAGGTTTGATTCTGGTTTTAATAGTTTTTCACATTCCAATGGTTCCCAACCACAATCAGAGCCCCAAAGACCCTGTTCCAAAACACTTAACGGCACTGACAATGTCGGTGTTGAAGAAGAGAAGGCGTCTAATTTTGTTTTCAAGTTCCAATATCAAACATGTAAATATCGCAAAGAATTCAACGGAAGGTATAGTGAAAGTTATGATTTTTCCAACAGAGATATGGCTTCTGCAAGCACCAACAGATATGAGTTCATTTTACCCAAGAGTTTCAGCCACTTCATTGAGGACGCAGAGGTTTTAAATTTGACTGTCAAAGAACTATATTTTCGTTCAAACGACGGTCCATTGGAGAAAAAGGATATTAAGAATTCTGGGTTCTTATCCGAGAGTGAGTTGGTGCCAGAAAATTCCGAAGCAGGAGCTGTTTATGCAGAAATACCTGACATTTCCGCAGGAAGAATAGACAAACAGGAAATGACAGAGAAGCTCAAGGCCGCGCCAACTGCAGAACAACCTGACTCCGGGAAAGATCAAGTAAAGAATACCAATAACAACACTCTAGTTGCAGAAATTTCAGCAGCAGATAATTTCGTTTCTGAAGACGACTTCATAGGTTTGAGCTCCGAATCAAATTCTATCAATTCAAACATTGATTTTCTATTTGAAAGTCAATCAAACGGTTCGACGGGCGATGGATTTTTGTACACAGACTTTGGAACTACTATTGGGCTGCACAAGCAGGGAAACGATGATCAAGAAAATGCAGGGTACTTAACAAAAGAAGATTTCGACTTAGAGGAGGATAATAATTCAGAGATTTTGGATGTTGGCTACAAGCCTGATGATTTTGACGAAGAAGATAGAGATACAATGGAAGAGCTTCAGAAATTAGAAGAAGAATGTCAGCTGCAGAATTCAAATATGGCAGACATGGAGAAAATATCTAGGAATAACTTTCATGACAGCATCAATTTCAAACCTGAAGAATTTGATAACCAAGAAAAAAGGTCAATCGATTGTTCAGACGAATCTGCAAAACCCAATTCTCAGAAGCCAACAATTTTGGATCTTGAGAATTCCAACCGGTTTGATACACTGTGGGAACATCAAGATTTAGTCGAACAGATGAAGATGGAGCTGAAGAAGGTGAGAGCCACTGGTCTCCCTACCATTCTTGAGGATTATGAGTTTCCAAGGATAATAGAAGACTTGAAGCCATGGAAGATTGACGAAAAATTCCAACATGGGAGTGTAATAAATGAGCTTCCAAAATTTTACAGGAGTTACAGAGAACGAATGCGAAAATTCGATATCTTAAATTACCAAAAGATGTGCGCTATAGGCTTTGTGCAGTCAAAAGACCCACAGCAATCGTCGTCAAGGTGCAAGACTTCGGCTCCTGCAATCGTATCCCTTATTTCACACAGATTTGGCCTTTGTAGACGTAAAAAAACTGAATTGAACCCAATGAAGAATTTCATTAAAGAATTGTACAGTGATTTGGAAATAGTTTATGTGGGACAGTTGTGCCTTTCTTGGGAACTCCTTCAGTGGGAATACGAGAAGGCCTCGGAGTTATGGGAATCTGACCAATATGGATTACGAAGGTACGATGAAGTGGCAGGCGAGTTTCAACAGTTTCAAGTGCTGCTGTTAAGATTTATGGAGAATGAACCTTTCCAAGGTCCACGGGTTGAAAACTACGTCAAGAATCGCTGTGTTATGCGAAATCTTCTTCAAGTTCCATTAATAAGGGAGGACAAGGCAAAGGATGAAGGGAGATTGAGGAAAAGGAGAGATAATGATGCTATGACATGTGATATGCTAGTAGAGATATTGGAAGAATCAATCAGAACAATTTGGCGTTTCATTAAAGGAGATAAAGATACATCCAGCTTGACTCCTAAAGGTATAAGAGAAACTCAGGTAGAAACTCAGGAAGATTCAGAGCTTCTTGAGGAAGTTCGAGCAGATCTTCATAAGAAATCCCTAGAGCCGTCAGATCTAGGGTTTGTTCGACCCGTAAAAAGACTACATTTACACACTCCCTGTCCCTCCTCGTCGTTCTCACTAGCCTTATTCACTATCTGCGAAGACAGAGGAGGAGCTGATAATCACTTCAAAATGGTGCAGCGGCTTACGTATCGTAAGCGCCATAGCTACGCCACCAAATCCAACCAGCACAGGGTTGTCAAAACCCCTGGTGGGAAGTTGGTGTATCAGACTACAAAGAAGAGAGCAAGCGGACCGAAGTGTCCTGTTACTGGGAAGAGGATTCAAGGGATTCCACACTTGAGACCTGCTGAATACAAGAGATCTAGATTGCCTAGAAACCGTCGGACAGTCAATCGAGCTTATGGAGGTGTTTTATCTGGAGGAGCTGTCAGAGAAAGAATAATCCGGGCTTTCTTGGTGGAAGAGCAGAAGATTGTGAAAAAGGTATTGAAGATCCAGAAGGCAAAAGAAAAGCAAGCATCAAAGAGTTAA 2679 0.4065 MQSLLGVFCRIFMRYYSPRATNKACSSTISPESYQIDSNFSEPKQESKAGYSKSLEYTDLKCERFDSGFNSFSHSNGSQPQSEPQRPCSKTLNGTDNVGVEEEKASNFVFKFQYQTCKYRKEFNGRYSESYDFSNRDMASASTNRYEFILPKSFSHFIEDAEVLNLTVKELYFRSNDGPLEKKDIKNSGFLSESELVPENSEAGAVYAEIPDISAGRIDKQEMTEKLKAAPTAEQPDSGKDQVKNTNNNTLVAEISAADNFVSEDDFIGLSSESNSINSNIDFLFESQSNGSTGDGFLYTDFGTTIGLHKQGNDDQENAGYLTKEDFDLEEDNNSEILDVGYKPDDFDEEDRDTMEELQKLEEECQLQNSNMADMEKISRNNFHDSINFKPEEFDNQEKRSIDCSDESAKPNSQKPTILDLENSNRFDTLWEHQDLVEQMKMELKKVRATGLPTILEDYEFPRIIEDLKPWKIDEKFQHGSVINELPKFYRSYRERMRKFDILNYQKMCAIGFVQSKDPQQSSSRCKTSAPAIVSLISHRFGLCRRKKTELNPMKNFIKELYSDLEIVYVGQLCLSWELLQWEYEKASELWESDQYGLRRYDEVAGEFQQFQVLLLRFMENEPFQGPRVENYVKNRCVMRNLLQVPLIREDKAKDEGRLRKRRDNDAMTCDMLVEILEESIRTIWRFIKGDKDTSSLTPKGIRETQVETQEDSELLEEVRADLHKKSLEPSDLGFVRPVKRLHLHTPCPSSSFSLALFTICEDRGGADNHFKMVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1747 892 MobiDBLite consensus disorder prediction 72 96 - -
Glsi12g1747 892 ProSitePatterns Ribosomal protein L34e signature. 787 800 IPR018065 -
Glsi12g1747 892 PANTHER OS09G0413600 PROTEIN 88 727 - -
Glsi12g1747 892 Gene3D - 811 892 - -
Glsi12g1747 892 MobiDBLite consensus disorder prediction 226 246 - -
Glsi12g1747 892 Pfam Protein of unknown function (DUF1666) 563 728 IPR012870 -
Glsi12g1747 892 PRINTS Ribosomal protein L34 signature 785 798 IPR008195 GO:0003735|GO:0005840|GO:0006412
Glsi12g1747 892 PRINTS Ribosomal protein L34 signature 798 815 IPR008195 GO:0003735|GO:0005840|GO:0006412
Glsi12g1747 892 PRINTS Ribosomal protein L34 signature 816 826 IPR008195 GO:0003735|GO:0005840|GO:0006412
Glsi12g1747 892 PRINTS Ribosomal protein L34 signature 838 860 IPR008195 GO:0003735|GO:0005840|GO:0006412
Glsi12g1747 892 MobiDBLite consensus disorder prediction 386 406 - -
Glsi12g1747 892 Coils Coil 351 378 - -
Glsi12g1747 892 Pfam Ribosomal protein L34e 773 868 IPR008195 GO:0003735|GO:0005840|GO:0006412
Glsi12g1747 892 Gene3D - 773 809 - -
Glsi12g1747 892 MobiDBLite consensus disorder prediction 386 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1747 Glsi-ChrGlsi12 33703466 33708813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1747 773 891 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 91.597 1.37e-66 216