Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1746 ATGGGAAGACCGCCTTGTTGCGATAAAGAAGGGGTCAAGAAAGGACCTTGGACTCCTGAAGAAGATATCATATTGGTCTCTTATATACAGGAACGTGGTCCTGGCAATTGGAGGACTGTTCCCACCAATACAGGGTTGGCACGGTGCAGCAAGAGTTGCAGACTTAGATGGACTAATTACCTTAAGCCAGGAATTAAACGTGGGAACTTTACAGAACAAGAGGAGAAGATGATAATCCATCTTCAAGCTCTTTTGGGCAATAGATGGGCTGCCATAGCTTCGTACCTTCCACAGAGAACAGATAATGACATAAAAAACTATTGGAATACCCATATGAAAAAGAAGCTCAAGAAATTACAAACAGGTCCCGAAAGCAGCTTTGGAGAAACGCCCCGAGGTCAGTGGGAAAAAAGGCTCCAAACGGACATCCACATGGCTAAGAGAGCTCTTAGTGCGGCTCTGTCACCAGCTGAATCAAACCCCTCCAGTGGCGGCTCCTTGTGTAGTAAACCAACCCAGCCCTTAAGCTATGCGTCAAGTACCGAAAACATAGCTCGTTTGTTGAATGGATGGATGAAGAATCCACCAAAGGCCTCTAGCACTAGCTCAGCTATGACCCAGAATTCCTTCACTGCTTCTAGCGAAGGAACCACAAGTACGTCAAAGAGAAAAAACGTTGAATTCTCTGAGACTTTTCAATCCTTGTTTGGATTTGAGTGTTTGGATTCTTCAAATTCTGAATTTTCCCCATCTCTTTCCCCCGAGGCTACTCTTTTCCAAGATGAAAGCAAGCCGGATATTGGTGCAGAAATGCCCTTCTCTTTGCTGGAGCAGTGGCTTCTGGATGAAGATAAAGCTAGCTGCGATGATACTACATCAGTTGCAGATGCCCATTTTTTCTAG 903 0.4507 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQERGPGNWRTVPTNTGLARCSKSCRLRWTNYLKPGIKRGNFTEQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHMKKKLKKLQTGPESSFGETPRGQWEKRLQTDIHMAKRALSAALSPAESNPSSGGSLCSKPTQPLSYASSTENIARLLNGWMKNPPKASSTSSAMTQNSFTASSEGTTSTSKRKNVEFSETFQSLFGFECLDSSNSEFSPSLSPEATLFQDESKPDIGAEMPFSLLEQWLLDEDKASCDDTTSVADAHFF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1746 300 CDD SANT 69 112 IPR001005 -
Glsi12g1746 300 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi12g1746 300 CDD SANT 16 61 IPR001005 -
Glsi12g1746 300 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Glsi12g1746 300 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi12g1746 300 Gene3D - 13 66 - -
Glsi12g1746 300 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi12g1746 300 SMART sant 13 63 IPR001005 -
Glsi12g1746 300 SMART sant 66 114 IPR001005 -
Glsi12g1746 300 MobiDBLite consensus disorder prediction 191 224 - -
Glsi12g1746 300 MobiDBLite consensus disorder prediction 194 224 - -
Glsi12g1746 300 FunFam MYB-related transcription factor 13 66 - -
Glsi12g1746 300 Gene3D - 68 140 - -
Glsi12g1746 300 MobiDBLite consensus disorder prediction 151 174 - -
Glsi12g1746 300 FunFam Transcription factor MYB30 68 126 - -
Glsi12g1746 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Glsi12g1746 300 MobiDBLite consensus disorder prediction 155 174 - -
Glsi12g1746 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 217 - -
Glsi12g1746 300 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi12g1746 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1746 Glsi-ChrGlsi12 33695508 33696678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1746 1 283 MYB Transcription Factor Family AT5G62470 50.000 2.59e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi12g1746 Myb_DNA-binding 5.5e-13 CL0123