Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1745 ATGAGGAAGCGGCAGGTAGTAGTGAGAAGAGAAAGCGATGCATGTATGGGCGGTAGTAGCGTGAGATATGGAGAGTGTCAAAAAAATCATGCGGCAAATGCTGGGGGATATGCGGTGGATGGTTGCCGGGAGTTCATGGCCAGTGGGGACGAAGGCACGACTGCTGCTTTAACTTGTGCTGCCTGTGGCTGCCACCGAAACTTCCATAAAAGATTAATGCTCCAATCTGATGCTCCTTCCAGTGGAACTTGA 252 0.5079 MRKRQVVVRRESDACMGGSSVRYGECQKNHAANAGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHKRLMLQSDAPSSGT 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1745 83 Pfam ZF-HD protein dimerisation region 21 71 IPR006456 -
Glsi12g1745 83 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 22 71 IPR006456 -
Glsi12g1745 83 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 23 72 IPR006456 -
Glsi12g1745 83 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1745 Glsi-ChrGlsi12 33690861 33691112 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1745 1 71 Zinc finger-homeobox gene family AT3G28917 65.854 1.19e-30 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi12g1745 ZF-HD_dimer 1.2e-29 No_clan