Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1743 ATGGACATAACCCCCGCAATCCCCAACATCACCGCCCCCAACACTACTAGTACAAAATCCCCAGAACCTGACACTGAAACGCCGACCCGGATCCAACCCACCTCCAAGTCCTTGTCCTTCTCCAACGGCGTCCTCAAGCGCCACCACCACCACCACCACCATCACCACCTCGCCAATCAGCATGTGGCGGTCACCTACAAAGAATGCTTGAAAAACCATGCAGCCAGCTTAGGAGGCCATGCGCTGGACGGTTGCGGCGAGTTCATGCCCTCCCCCAACGTTAATTCCTCAGACCCCAGCTCTATCAAATGCGCTGCCTGTGGCTGCCACCGCAATTTCCACCGCCGTGAACCTGAAGAGCCTATTCCAACTACTCATGTTATCGAGTATCAGCCCCACCATCGACACCACCCTCCCCCACCTCCACCGTTTCAAGCTTCGAATCGGAGCCCCAATTCAGCTTCCCCCCCTCCGATTTCCTCTTCCTACTACCCCTCCGCACCCCACATGCTTCTGGCTCTCTCTGCTGGCCTACCAGCTCATCCGGAGAGCACGGCACCCGCGAACGCTTTGGGGACGCTGAGTCCAAATACGCGGAAGCGGTTCAGGACTAAGTTCACCCAAGATCAGAAGGATAAGATGCATCAGTTCGCTGAGAGAGTGGGGTGGAAGATGCAGAAGAGGGATGAGGAATTGGTGCAAGAGTTCTGCCGTGAGGTTGGGGTGGACAGAGGAGTTTTGAAGGTTTGGATGCACAATAACAAGAACACGTTAGGAAAGAGAGATGCGAATGGTAATAGGAGCGTTCTTGAGCTGGAACTGGACCCCAATACCGACAACAATGAAATCAGCGGCACCAAAAACAACAACGACAACGGCAGCACCGAGGATCCAAATCACTACCCGACCGATAGTGGGGTAAACGTCGGTACTAATGGGTCGTCTTCATCTTCTTAA 957 0.5434 MDITPAIPNITAPNTTSTKSPEPDTETPTRIQPTSKSLSFSNGVLKRHHHHHHHHHLANQHVAVTYKECLKNHAASLGGHALDGCGEFMPSPNVNSSDPSSIKCAACGCHRNFHRREPEEPIPTTHVIEYQPHHRHHPPPPPPFQASNRSPNSASPPPISSSYYPSAPHMLLALSAGLPAHPESTAPANALGTLSPNTRKRFRTKFTQDQKDKMHQFAERVGWKMQKRDEELVQEFCREVGVDRGVLKVWMHNNKNTLGKRDANGNRSVLELELDPNTDNNEISGTKNNNDNGSTEDPNHYPTDSGVNVGTNGSSSSS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1743 318 MobiDBLite consensus disorder prediction 1 37 - -
Glsi12g1743 318 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 65 117 IPR006456 -
Glsi12g1743 318 MobiDBLite consensus disorder prediction 273 318 - -
Glsi12g1743 318 FunFam Zinc-finger homeodomain protein 2 188 260 - -
Glsi12g1743 318 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 117 IPR006456 -
Glsi12g1743 318 MobiDBLite consensus disorder prediction 8 37 - -
Glsi12g1743 318 Pfam ZF-HD protein dimerisation region 64 118 IPR006456 -
Glsi12g1743 318 NCBIfam homeobox domain, ZF-HD class 199 256 IPR006455 -
Glsi12g1743 318 SUPERFAMILY Homeodomain-like 192 260 IPR009057 -
Glsi12g1743 318 Gene3D - 189 260 - -
Glsi12g1743 318 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 258 - -
Glsi12g1743 318 MobiDBLite consensus disorder prediction 131 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1743 Glsi-ChrGlsi12 33680918 33681874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1743 1 264 ZF-HD Transcription Factor Family AT5G15210 53.506 1.75e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi12g1743 ZF-HD_dimer 1.3e-28 No_clan