Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1717 ATGTCGACTGGATTCATCCCGTTGCTGATGTTTTATGCTGTCGGTCTTTCAGTTTTAGTTCATGGACAGCAACAGACAGGATTCATAAGCATTGACTGTGGTGGTCCAGAGAATTTTGAATACACAGATGATACCACTCAAATAAAGTACAACACAGATGGAAATTACATACAAACAGGGGTCAACAAGAACATCTCCTCTGAATATTCATACCCAAATAATCTCAATCTCCCATTGCCACTTTCAGATCTCAGAAGTTTTCCTCAGGGACAGAGAAACTGTTACATCCTGAAAGCTGGAGGAAGAGGCAGTTTACAATTGATAAGGGCTTACTTCTTGTATGGAAACTACGATGGAGAAGACAAGCTACCAGAGTTCGATCTCTATAACGGTGTCAATTTCTGGTCCTCAGTGAGTTTTAGAAACGCCTCAGACCAAGTCATCATGGAAATCATCAGTATGGCAGAGTCAGAAGTGACAAATGTTTGTCTTGTGAACAAGGGATTGGGAACTCCTTTCATCTCAGCATTGGAACTAAGACCCCTGAACAGTTCTATTTATAAAACTGAGTTTGGGAGGTCTGCTTCACTGTTACTTTTCAAAAGATGGGACATTGCAGCACTCAATGGAAGTGGTAGATATGAAGATGACATTTACGATAGAATTTGGTACCCTTACAGTTCCTCTTACTGGGATTCTGTGAGCACTTCTTCAGCGATAAATGCCAATAACAATGGCTATCGAGCACCATTTGAAGTCATAAGGACTGCTGCTAGACCGAGGAATGTTAGTGCTCCTTTGGAATTCTCCTGGGTCCCAAATGATCCAACTTCAAAATTCTATGTCTACTTGTACTTTGCTGAAGTGGAGCAGCTTGGGAATAACCAACTAAGGAAATTCAATGTATCCTGGAATGGATCTCCATTATCTGGACCCTTAGTCCCGCGCTACTTATTTTCAGCCACAGTATCTAATTTGAAATCCTTGATGGGAAATGAACATCGAATTTCTATTCATAGAACTGAAGATTCAACCGTTCCACCCATCCTTAATGCAGTTGAGATTTATGAAATAAGAATGCTGGATGCACTTCCAACATTTCACCAAGATGTGAATGCTATTATGGATGTCAAAGAAGCATATGGAATTCAAAGAAATTGGGTGGGTGATCCGTGTGAGCCGAAGAACTACTCTTGGGAGGGCTTAACATGCAACTATAGCAATTCACTTCCTCCACGAATTATATCTCTGAATCTGAGCTCAAGTAGTTTGAGTGGGGTAATAGCTTCTGCCATTTCCAACCTCTTGTCACTGGAATCATTGGATTTATCAAACAACAGTTTATCTGGATCAGTTCCTCAGTTTTTGGAAGAATTGAGATCCCTTAAATTTTTGAATTTGAAAGGCAACCAACTATCAGGTTCTATCCCTACCACTCTTCTAAAAAGATCAAGGGCAGGATTGCTTACACTGAGTGCAGATGCCCAAAATCATTGCGACTCAAATACGTGCCAAAAGAAGACGAATATTCTTGTTCCCATAGTTGCTTCAATATCATCAGTTCTAGTTCTACTGATTGCTTTTATTCTCTTTCAGAAACTTAAAAGAAATAAACAACCAGATAAGGAGATGTACAAGGCCAACAAAGAAGGAAAACTTGTAGCATCAAAGAAGTGGCAATATAGTTATGGCGAGGTATTGGACATTACCAACAACTTTGAAATGGTGATTGGGAAGGGAGGGTTTGGAATTGTGTACCGTGGTCAGATGAAAGATGGCAACCAAGTTGCAGTGAAGATGCTTTCACCATCATCATCTCAGGGGCCAAAGGAATTTCAGACTGAGGCTGAGCTCTTGATGACAGTTCATCACAGAAATTTGGTTTCCTTCATTGGTTATTGTGATGATGGTAACAAGATGGCACTCATATATGAGCACATGGCAAATGGCAACCTGAAAAATTATCTCTCAGAGAGAAATTCACGTGGCTTGAGTTGGGGAAGAAGACTACAGATAGCAATTGATGCTGCACAGGGATTGGAGTACCTACACCATGGATGCAAGCCACCTATAATACATAGAGATGTGAAGACAGCCAACATTCTCGTAAGTGAAAAGTTGGAGGCTAAGATAGCAGATTTTGGCCTCTCCAAGGTGTTCAAGAATGATAACAGAGATGTAGGATCTTCAGTTACTAAGAATGATGACAGAAATGTAGAATCTGCAATCATGGGCACCAAAGGGTACCTAGACCCAGAGTACTACAAATCAAGGAAGTTGAATGAGAAAAGTGATATTTATAGCTTTGGAATTGTTCTATTGGAGCTAATTACAGGTCAACCTGCAGTATTAAAAGGCAAAGAATCAACCCACATACTTGAGTGGGTGAGACCTGAGATTCGAAGAGGGGATTTGAGCAGAATTGTGGATCCAAGGCTTCAAGGCAAATATAATGCAAGATCTATATGGAAAGCATTAGGAGCAGCAATGGCATGTACGGCATCAACCTCCATTCACAGGCCTGCAATGAGTTTTGTGTTAGCAGAGCTAAAAGGGTGTCTGGAAACGGAGTTGCCTAATCAGAGTGAAACATACTTTATACCAAGGCAGGTCTACAGGGAATTACATAGTTCATCTGAAGCTTATTCCTTGGGTGATGAATCTATCACCTATCCGTTCCCAAGATAG 2688 0.4074 MSTGFIPLLMFYAVGLSVLVHGQQQTGFISIDCGGPENFEYTDDTTQIKYNTDGNYIQTGVNKNISSEYSYPNNLNLPLPLSDLRSFPQGQRNCYILKAGGRGSLQLIRAYFLYGNYDGEDKLPEFDLYNGVNFWSSVSFRNASDQVIMEIISMAESEVTNVCLVNKGLGTPFISALELRPLNSSIYKTEFGRSASLLLFKRWDIAALNGSGRYEDDIYDRIWYPYSSSYWDSVSTSSAINANNNGYRAPFEVIRTAARPRNVSAPLEFSWVPNDPTSKFYVYLYFAEVEQLGNNQLRKFNVSWNGSPLSGPLVPRYLFSATVSNLKSLMGNEHRISIHRTEDSTVPPILNAVEIYEIRMLDALPTFHQDVNAIMDVKEAYGIQRNWVGDPCEPKNYSWEGLTCNYSNSLPPRIISLNLSSSSLSGVIASAISNLLSLESLDLSNNSLSGSVPQFLEELRSLKFLNLKGNQLSGSIPTTLLKRSRAGLLTLSADAQNHCDSNTCQKKTNILVPIVASISSVLVLLIAFILFQKLKRNKQPDKEMYKANKEGKLVASKKWQYSYGEVLDITNNFEMVIGKGGFGIVYRGQMKDGNQVAVKMLSPSSSQGPKEFQTEAELLMTVHHRNLVSFIGYCDDGNKMALIYEHMANGNLKNYLSERNSRGLSWGRRLQIAIDAAQGLEYLHHGCKPPIIHRDVKTANILVSEKLEAKIADFGLSKVFKNDNRDVGSSVTKNDDRNVESAIMGTKGYLDPEYYKSRKLNEKSDIYSFGIVLLELITGQPAVLKGKESTHILEWVRPEIRRGDLSRIVDPRLQGKYNARSIWKALGAAMACTASTSIHRPAMSFVLAELKGCLETELPNQSETYFIPRQVYRELHSSSEAYSLGDESITYPFPR 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1717 895 FunFam Leucine-rich repeat receptor-like protein kinase 546 646 - -
Glsi12g1717 895 SUPERFAMILY Protein kinase-like (PK-like) 557 850 IPR011009 -
Glsi12g1717 895 PANTHER OS07G0107800 PROTEIN-RELATED 29 854 - -
Glsi12g1717 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672|GO:0006468
Glsi12g1717 895 Pfam Protein tyrosine and serine/threonine kinase 574 796 IPR001245 GO:0004672|GO:0006468
Glsi12g1717 895 ProSitePatterns Protein kinases ATP-binding region signature. 577 599 IPR017441 GO:0005524
Glsi12g1717 895 Gene3D Phosphorylase Kinase; domain 1 577 647 - -
Glsi12g1717 895 ProSiteProfiles Protein kinase domain profile. 571 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1717 895 Gene3D Transferase(Phosphotransferase) domain 1 648 869 - -
Glsi12g1717 895 SMART serkin_6 571 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1717 895 SUPERFAMILY L domain-like 385 483 - -
Glsi12g1717 895 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 647 863 - -
Glsi12g1717 895 Pfam Malectin-like domain 31 358 IPR024788 -
Glsi12g1717 895 Gene3D Ribonuclease Inhibitor 363 487 IPR032675 -
Glsi12g1717 895 CDD STKc_IRAK 577 852 - -
Glsi12g1717 895 FunFam Leucine-rich repeat receptor-like kinase 369 499 - -
Glsi12g1717 895 PRINTS Leucine-rich repeat signature 459 472 - -
Glsi12g1717 895 PRINTS Leucine-rich repeat signature 438 451 - -
Glsi12g1717 895 Pfam Leucine rich repeat 416 472 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1717 Glsi-ChrGlsi12 33551427 33555716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1717 1 881 Receptor kinase-like Gene Family AT4G29180 52.285 0.0 916
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Glsi12g1717 Malectin_like 7.7e-106 CL0202