Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1716 ATGTACAAATTTCTGATATGTAGGATCCAAGCTCCTCGCTTTTATCCAAATCATTTATGTAATGGATGCTTTATTAAAATTTATGTGATCCTTGGTTTTATGTTGTTTTCGACTTCAAGGCAATCCATATTCTCGAAGACTACTGCCCAGACCAGCTTTCGTAGATATGGTCTTTTAGTTTCAATCTCAAGTATGTATCTACACCAGCTCTTCGTCCTCTGCTTCGGCTTCAGGTGGATTCTTGACAAACAGGTCTCATTTCTCGTTGCCCCTCTTTTGCCAAGATTAGCTGCCAAATGGAAGCAGTATGACCTTGAAGTGGACTGGGCTGTGTGTTTACGTTTGGGGTTAGAGTTTATGTTGACGAAGACTACACTGGAAGCAGACTTGGCCATAACATTGAAATTGCGCTTCAGGGTCATGGCTAATTTTCTTTATTTTTCGTTACTAGTCATTTTCTCACAAACGAGTTCTGATCTCCAAAAGACAAGTGTTCCTGAGAAGGGATCGAATGTCAGTACTTGTTTGAATGCTCTCGTTGACTGGTTCTCCCTTTACCCTTGTTCCTTCTTCAGAATAGCCAGCTCGGTAGTCATGGGAAGAGCTCCGTGTTGTGACAAAGCTAACGTGAAAAGAGGGTCATGGTCTCCTGAAGAAGACGCCACCCTCAAAAACTACCTCGAGAAAAATGGCACCGGTGGTAATTGGATAGCCCTCCCCCAAAAAGCAGGTCTTAAGCGTTGTGGGAAGAGCTGTCGACTGAGATGGCTCAACTATCTCAGGCCTCATATAAGGCTCGGGGGTTTCACTGAGGAGGAAGACAAAATTATCTGTACTCTGTATGCTACCATCGGAACTGCTCAATTGTCTGGCAGAACAGACAATGATGTGAAAAACCACTGGAATACAAAACTAAAGAAGAAGGTTTTGGCAGGAAACATTAATGCCACCAGCAACGCTAGTTGTGGACATTTCTCATCCTTTTCCTCTCAACCTAAAATTGAAACCTTTGTGTTTGATAACATGAATTCAGCCTGTTCTGAACCCCGCCTTCTGAATTTGGATACAAAACCAACTCCGATTGCATTGTCCATGCCTATGGAATCCGGATTTTCATCAGATTCTGGCGGCAGCGTCAGTAAGAGTAGTAGTTTACCATATTCTAAGCAAGTTTCAACTTCGGCTTCCTTGGTGGAAAGAAATGATCATATCAAATGGTTTGAATTTGAGCAGGCTGAAGATGACGCAAGTTTGCTTGATCTTGGGTATGATGATCTCCTGAATGAGTTTGCTTATTAA 1299 0.4249 MYKFLICRIQAPRFYPNHLCNGCFIKIYVILGFMLFSTSRQSIFSKTTAQTSFRRYGLLVSISSMYLHQLFVLCFGFRWILDKQVSFLVAPLLPRLAAKWKQYDLEVDWAVCLRLGLEFMLTKTTLEADLAITLKLRFRVMANFLYFSLLVIFSQTSSDLQKTSVPEKGSNVSTCLNALVDWFSLYPCSFFRIASSVVMGRAPCCDKANVKRGSWSPEEDATLKNYLEKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPHIRLGGFTEEEDKIICTLYATIGTAQLSGRTDNDVKNHWNTKLKKKVLAGNINATSNASCGHFSSFSSQPKIETFVFDNMNSACSEPRLLNLDTKPTPIALSMPMESGFSSDSGGSVSKSSSLPYSKQVSTSASLVERNDHIKWFEFEQAEDDASLLDLGYDDLLNEFAY 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1716 432 Gene3D - 205 265 - -
Glsi12g1716 432 SUPERFAMILY Homeodomain-like 209 301 IPR009057 -
Glsi12g1716 432 MobiDBLite consensus disorder prediction 366 386 - -
Glsi12g1716 432 ProSiteProfiles Myb-like domain profile. 207 260 IPR001005 -
Glsi12g1716 432 FunFam Transcription factor RAX3 205 266 - -
Glsi12g1716 432 CDD SANT 269 305 IPR001005 -
Glsi12g1716 432 MobiDBLite consensus disorder prediction 365 386 - -
Glsi12g1716 432 Gene3D - 268 324 - -
Glsi12g1716 432 Pfam Myb-like DNA-binding domain 212 260 IPR001005 -
Glsi12g1716 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 269 309 IPR017930 -
Glsi12g1716 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 264 IPR017930 -
Glsi12g1716 432 PANTHER OS09G0431300 PROTEIN 199 374 - -
Glsi12g1716 432 SMART sant 265 307 IPR001005 -
Glsi12g1716 432 SMART sant 211 262 IPR001005 -
Glsi12g1716 432 CDD SANT 214 260 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1716 Glsi-ChrGlsi12 33543346 33548644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1716 199 310 MYB Transcription Factor Family AT5G65790 76.271 5.71e-62 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi12g1716 Myb_DNA-binding 1.9e-12 CL0123