Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1715 ATGATGCTCGGCGAGCCACATCGCGCTAATCCGACGGTTCACGTCCCCCCTTGGCCGGTCCTCGATGATACGATGCCGGATATGTACTCCCCTTACCCTGTGAGCGGTGTCTCCGCCAGCTCCGACAGCAATGCCGGCGGCGGCGATTACTCTCCCTATTACTTGCAAGAAGCACTCACGGCACTCCAGCGTTATCTGCCTTCAAACGACACCGATATCGACTCCGACTCTGAGATTCTGGGTCGAGAGTTGGATTCTCCGGTGGATGCCTATTCCTGCGATCATTTCCGCATGTTCGAGTTCAAGGTGAGGAGGTGCGCTCGTGGCAGGTCACATGACTGGACTGAATGTCCTTATGCTCATCCTGGCGAGAAGGCTCGTCGGAGGGACCCGAGGAAGTATCACTATTCGGGTACTGCGTGCCCCGATTTTCGCAAGGGGAATTGCAAGAAGGGAGATGCATGTGAGTTTGCTCATGGGGTGTTTGAGTGTTGGCTCCATCCGGCCCGTTATCGCACTCAGCCATGCAAGGACGGTACTAGCTGCCGCAGAAGAGTTTGTTTCTTTGCTCACACGCCGGAGCAACTCAGGGTGCTGCCTCAGCAGAGTCCCAGGAGTGTCAACTCGGCAGACTCTTATGATGGGTCTCCTCTCAGGCAGGCGATTGAGTCATCTAGTGCGAAAACGCTGCCATTCATGACCTCTCCTGCGTCGATTTCCCCGCCTCCTACGCCTCCGACGGAATCTCCACCTATGTCGCCGATGACACAGACCCTGAGCCGCTCTCTGGGTTCAAGGCCTATAAATGAGATGGTGGCTTCTCTGCGTAATTTGCAGCTCGGAAAGGTGAAGTCACTACCCTCTTCCAGGAATGTTCCCATGGGGTCTCCTTGTTTCGGATCTCCAAGGGGATCCGTGCTGCGACCCGGATTCTGTAGCCTCCCGTCTACTCCTACGGAGGCACCGACTCGTTCTGGTGTCAGCTATTTCGATGCGTGGGATCAGAGTTGCGAGGAGGAGCCTGTGATGGAGAGGGTGGAATCTGGAAGGGACATACGGGCAAAGATGTTTGAGAAGTTGAGCAAAGAGAACTCTCTGGATCGATCGGGTCAAAGTGGATCGGGTGGAGCTCCTGATGTTGGTTGGATTTCGGAGCTGGTGAAGTAA 1167 0.5544 MMLGEPHRANPTVHVPPWPVLDDTMPDMYSPYPVSGVSASSDSNAGGGDYSPYYLQEALTALQRYLPSNDTDIDSDSEILGRELDSPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSVNSADSYDGSPLRQAIESSSAKTLPFMTSPASISPPPTPPTESPPMSPMTQTLSRSLGSRPINEMVASLRNLQLGKVKSLPSSRNVPMGSPCFGSPRGSVLRPGFCSLPSTPTEAPTRSGVSYFDAWDQSCEEEPVMERVESGRDIRAKMFEKLSKENSLDRSGQSGSGGAPDVGWISELVK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1715 388 MobiDBLite consensus disorder prediction 236 252 - -
Glsi12g1715 388 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 160 IPR000571 GO:0046872
Glsi12g1715 388 FunFam Zinc finger CCCH domain-containing protein 66 93 161 - -
Glsi12g1715 388 MobiDBLite consensus disorder prediction 227 260 - -
Glsi12g1715 388 PANTHER UNKEMPT FAMILY MEMBER 57 388 IPR045234 -
Glsi12g1715 388 Gene3D - 136 199 - -
Glsi12g1715 388 ProSiteProfiles Zinc finger C3H1-type profile. 136 162 IPR000571 GO:0046872
Glsi12g1715 388 SMART c3hfinal6 170 193 IPR000571 GO:0046872
Glsi12g1715 388 SMART c3hfinal6 135 161 IPR000571 GO:0046872
Glsi12g1715 388 MobiDBLite consensus disorder prediction 362 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1715 Glsi-ChrGlsi12 33541799 33542965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1715 91 293 C2H2 Transcription Factor Family AT5G12850 47.442 2.93e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi12g1715 zf-CCCH 3.9e-06 CL0537