Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1705 ATGAACAAGATCAACAATTTGAGCTCCGTAAACAGTTGTGATCTGATAGATGCGAAGCTGGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCTGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTTGGTCTACCAGCAGGAGTGAAGTTTGATCCAACAGACCAAGAATTAATAGAGCATCTTGAAGCCAAAGTGGAGGCAAAGAATATGAGATCGCACCCTTTGATCGATGAGTTCATTCCTACAATTGAAGGAGAAGATGGAATTTGTTATACCCATCCTGAGAAACTTCCAGGAGTAACGAGAGATGGCTTGAGTAGGCACTTCTTCCACAGACCTTCAAAGGCTTACACAACTGGGACAAGAAAGAGAAGAAAAATTCAAAACGAATGTGACTTGCAAGGCGGAGAAACCCGATGGCACAAGACTGGTAAGACCAGGCCAGTGATGGTGAATGGTAAACAAAAGGGATGCAAGAAAATCCTAGTGCTCTATACCAATTTCGGGAAGAACAGAAAACCCGAGAAGACCAACTGGGTGATGCACCAGTACCATCTGGGTCAGCACGAGGAGGAGAAAGAAGGAGAACTTGTGGTGTCAAAGATTTTCTATCAGACGCAGCCAAGACAATGCAATTGGTCTGATAGAAGTGCAACACCTGGGGAAGGAAGTGGTGAGCCCAATAGCAGAAGAGACAGTGGAAGTGGGAGTTGTTCTTCTAAGGAGATAATTACTCACAGAGATGAGATGTCTGCTGTTGGCGTCCCTCCCATATCAAGCTACGCTGCCTTGGATATTCAACACCTAAAATCCGACCATTTCAGCTTCATGCCATTCAGAAAAACCTTCGACGAGGTGGGAATAGGAGAGGCTTCGACGGCAAGAGAAGTGCAAGCAGGAGGGTCATGCGTAGAAGTTCATGCAGGGCAGCGGCAACATCACGTGGCTCATCATCAACACCAACACCAACAGATTGCAACTACAGCCTTCCATATCAGTAGGCCTTCACTTCCCATCTCTACCATTATCTCTCCACCTCCTCTCCACCATGCCTCCATCATTCTCGACGATAACTCATACCACGTCTCTAGAATTATGCTCCAAAACGAACATTTCCAGCAACAGCAGCAGCAACATCATAAACTAGAAGCAAGGTCTGCGTCTGGATTGGAGGAACTAATTATGGGGTGCACTTCAACTGATATTAAAGAGGAATCATCCATCACAAATCCGCATGAACCTGAATGGTTGAAGTATTCTTCTTACTGGCCTGACCCTGACAACTCGGATCATCATGGTTAG 1311 0.463 MNKINNLSSVNSCDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMRSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATPGEGSGEPNSRRDSGSGSCSSKEIITHRDEMSAVGVPPISSYAALDIQHLKSDHFSFMPFRKTFDEVGIGEASTAREVQAGGSCVEVHAGQRQHHVAHHQHQHQQIATTAFHISRPSLPISTIISPPPLHHASIILDDNSYHVSRIMLQNEHFQQQQQQHHKLEARSASGLEELIMGCTSTDIKEESSITNPHEPEWLKYSSYWPDPDNSDHHG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1705 436 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Glsi12g1705 436 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Glsi12g1705 436 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 11 398 IPR044799 GO:0003700
Glsi12g1705 436 FunFam NAC domain-containing protein 73 56 212 - -
Glsi12g1705 436 MobiDBLite consensus disorder prediction 214 243 - -
Glsi12g1705 436 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Glsi12g1705 436 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1705 Glsi-ChrGlsi12 33469845 33473053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1705 13 433 NAC Transcription Factor Family AT5G56620 54.204 9.00e-141 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi12g1705 NAM 4.2e-24 No_clan