Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1702 ATGGAGAAGACCTGGATACTGGCTATTCTCCTTCTCCTTAACCTCCATTTAAACGCAGTAAAAGCAGCCCTTGGCATCGGCGGTGGTATTGGTGTTGGTGTAGGCGTTGGCATTGGCAATGGTGGTCGTGGTGGCGGCGGCGGCATCGGCGCAGTGGTTGGGGTTGGTGGCGGGAATAACAGCCCAGGCCCCTCTGGATCTTCAGTGCCAAAGCCAGACAAAGCTTACACGGCTCTCCAGGCATGGAAATCCGCAATTACAGACGACCCATTAAGGATTTTAGACAGTTGGAATGGTTCTAACGTGTGTTCTTATAAAGGAGTCTTTTGTGCAAATCCTCAGGATGAAATGGCTGCATCAGCTGGCTCTGTTGTTGCTGGAATAGATCTCAACCATGCAAACCTCCAAGGGACTCTCGTCAAAGAGCTCTCTTTACTCACAGATATGTCTCTTCTCCACCTCAACAGCAACAGATTTACAGACACAGTTCCTGATACTTTCAGAGACCTTTCGTCTCTGGAAGAATTAGACCTCAGCAACAATCAACTTTCAGGTCCTTTCCCCACAGTTACCTTGTCAATGCCTAGTCTCGTTTACTTGGACCTCAGATTCAACTCCTTCTCAGGACCCCTCCCCGGAGAACTTTTCAGTAAGAATCTGGATGCAATATTCCTCAACAACAATCAATTCGAAGGCGAAATTCCCCAAAATTTGGGCAATTCCCCCGCTTCAGTCATAAATTTAGCCAACAACAAATTGAGTGGAAGCATCCCATTTGGCCTTGGTTTCATGAGTTCTAAGCTAAGGGAGATTCTCTTCCTCAATAACCAGTTAAGTGGCTGCATTCCTGAAGGAGTGGGGCTCTTTACAGATATGCAAGTTCTGGATGTGAGCTTGAATTCACTTATGGGCCATTTGCCAGACACGATATCTTGTCTGCAACAAATTGAAGTCCTGAATTTGGCGCATAACAAGCTTTCTGGGGAATTACCAGACGTGATCTGCTCTCTGAGAAGCCTAGTAAATCTAACTGTTGCCTATAATTTCTTTTCTGGGTTCAGCCAGGAATGCTCAAGGCTTTTCTTTCGGAATGTGGGTTTTGATTTCTCAGTTAACTGCATTCCCGGGAGGGACATGCAGAGACCTCAACCAGAGTGTTCCGTGATCCCAGGTGGTAGCCTGAGTTGTCTGCGGATCCCTGCTCCAAAGCCTCTTGTCTGTGGTTCGCTGGCTGTAAGTACCTTCAAGCACACTGATCCTCCCAGTCCCAGTTCATCTTCCCCTTGA 1287 0.4747 MEKTWILAILLLLNLHLNAVKAALGIGGGIGVGVGVGIGNGGRGGGGGIGAVVGVGGGNNSPGPSGSSVPKPDKAYTALQAWKSAITDDPLRILDSWNGSNVCSYKGVFCANPQDEMAASAGSVVAGIDLNHANLQGTLVKELSLLTDMSLLHLNSNRFTDTVPDTFRDLSSLEELDLSNNQLSGPFPTVTLSMPSLVYLDLRFNSFSGPLPGELFSKNLDAIFLNNNQFEGEIPQNLGNSPASVINLANNKLSGSIPFGLGFMSSKLREILFLNNQLSGCIPEGVGLFTDMQVLDVSLNSLMGHLPDTISCLQQIEVLNLAHNKLSGELPDVICSLRSLVNLTVAYNFFSGFSQECSRLFFRNVGFDFSVNCIPGRDMQRPQPECSVIPGGSLSCLRIPAPKPLVCGSLAVSTFKHTDPPSPSSSSP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1702 428 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 66 419 - -
Glsi12g1702 428 SMART LRR_typ_2 313 337 IPR003591 -
Glsi12g1702 428 SMART LRR_typ_2 170 193 IPR003591 -
Glsi12g1702 428 SMART LRR_typ_2 146 169 IPR003591 -
Glsi12g1702 428 SMART LRR_typ_2 194 218 IPR003591 -
Glsi12g1702 428 Gene3D Ribonuclease Inhibitor 73 241 IPR032675 -
Glsi12g1702 428 SUPERFAMILY L domain-like 76 359 - -
Glsi12g1702 428 PRINTS Leucine-rich repeat signature 313 326 - -
Glsi12g1702 428 PRINTS Leucine-rich repeat signature 173 186 - -
Glsi12g1702 428 Pfam Leucine rich repeat 152 206 IPR001611 GO:0005515
Glsi12g1702 428 Gene3D Ribonuclease Inhibitor 242 363 IPR032675 -
Glsi12g1702 428 FunFam Leucine-rich repeat extensin-like protein 1 76 240 - -
Glsi12g1702 428 FunFam Leucine-rich repeat receptor protein kinase EMS1 262 356 - -
Glsi12g1702 428 Pfam Leucine rich repeat N-terminal domain 74 110 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1702 Glsi-ChrGlsi12 33459159 33460445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1702 70 398 Leucine-rich Repeat extension Gene Families AT3G24480 51.045 2.47e-106 322