Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1692 ATGCCCTCTTCCCCTTTTCTTCTTTGTCTCACATTCTCGCTGAGAATGTCAAATTTGCATTGTGTTTCCAATGCTTTATTAGTTCTTCTTCTTCTTCTGATGCAAAACCCCAGTACAATACTGTGCCATACAAAGGGAATTCGATCCAGGCGTTCTCCAGGGATTGCGTTGACGACTAATATGACCCGAGTCCAGTATTCAGAAGAGCAGTTCATAAAATGGGTCAAGTTTGTTGGTAGCCTCAAACACTCTGTTTTTAGGACAGCAAAAAATAAGCTTTTTCCCTCGTACACTTTGCACGTCTCTAAGAAGGGGTCTGCTGGAGGTTTCACGTCAATTCAAGCAGCCATTGATTCCCTTCCGTTCATCAATCTTGTGAGAGTGGTGATAAAGGTCCAAGCAGGGGTTTACACGGAGAAAGTTGAGATTCCTCCTTGGAAATCCTTCATAACCATACAAGGAGCAGGCTCAGATAAAACCATTGTTCAATGGGGTGACACTGCTCAAACACGAGGGCCAAAAGGCCAGCCACTGGGAACCTATGGTTCAGCAACTTTTGCCGTGAATGCACCTTATTTTATTGCCAAAAACATTACATTCAAAAACACTGCCCCTGTTCCTGCACCAGGAGCAGTTGGCAAGCAGGCAGTGGCATTGAGAATTTCAGCAGATACAGCAACATTCCTTGGCTGCAATTTCTTAGGAGCACAGGACACTCTCTATGATCATGTGGGTAGGCATTATTATAAGGATTGCTACATTGAAGGCTCTGTTGATTTCATTTTCGGCAACGCCCTCTCTCTCTTTGAGAGATGTCACGTGCATGCGATAGCACAGAATATAGGGGCCCTAACAGCTCAGGGAAGGAGCAGTTTATTGGAAGACACAGGGTTCTCGTTTGTGCACTGTAAGGTCACGGGGTCAGGGGCACTATACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTGGTCTTCGCTTACACTAATATGGACAATATCATCATTCCCAAGGGCTGGTACAACTGGGGTGACCCTAACCGGGAAATGACCGTATTCTACGGACAGTACAAATGCACGGGGCCAGGAGCAAGCTTTGCAGGCAGAGTATCATGGTCAAGAGAACTCACTGACGAGGAAGCTAAACCTTTTATTTCTCTTAGCTTCATTGATGGGTTTGAATGGATCAAATTGTAG 1194 0.4573 MPSSPFLLCLTFSLRMSNLHCVSNALLVLLLLLMQNPSTILCHTKGIRSRRSPGIALTTNMTRVQYSEEQFIKWVKFVGSLKHSVFRTAKNKLFPSYTLHVSKKGSAGGFTSIQAAIDSLPFINLVRVVIKVQAGVYTEKVEIPPWKSFITIQGAGSDKTIVQWGDTAQTRGPKGQPLGTYGSATFAVNAPYFIAKNITFKNTAPVPAPGAVGKQAVALRISADTATFLGCNFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFERCHVHAIAQNIGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTNMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEAKPFISLSFIDGFEWIKL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1692 397 ProSitePatterns Pectinesterase signature 2. 254 263 IPR033131 -
Glsi12g1692 397 SUPERFAMILY Pectin lyase-like 94 396 IPR011050 -
Glsi12g1692 397 Gene3D - 95 397 IPR012334 -
Glsi12g1692 397 FunFam Pectinesterase 95 397 - -
Glsi12g1692 397 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 90 396 - -
Glsi12g1692 397 Pfam Pectinesterase 101 391 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1692 Glsi-ChrGlsi12 33407140 33409419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1692 16 395 Carbohydrate Esterase AT5G47500 44.094 9.34e-103 306