Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1679 ATGGGTTCCTTACAGAAGGGAGAGAAGAGAAGAAAAGAGAGAGGTTCTATAGCCATAATATTCAGATATGCTGATTGGATTGATGCTGTGCTCATGTTAATGGGTGCTTTGGGAGCAATAGGAGATGGCTTGTGTACGAACGTATTGATGGTATTTGTTAGCCGTATCATGAACAGCTTGGGTAACGGGAATAATCAACGAAGCAGAGGGAATTTCATGGCTGACGTTGAAAAGTGCAGTTTGTATTTTGTCTACTTGGGCCTTGTAGCCATGGTGGTGGCCTTCATGGAAGGATATTGCTGGAGCAAAACTAGCGAGAGGCAGGTGTTGAGAATGCGTTACAAGTACTTGGAAGCTGTCCTCAGACAAGAAGTGGGGTTATTCGATTCGCTAGAAGCAAAAACTTCAGAAATCATTAATAGCATATCAAAGGACACTTCTCTCATCCAAGAAGTTCTAAGTGAAAAGGTGCCCCTATTTCTTATGCACTCCTCATCATTTATATCCGGGATTGCATTCTCCACGTACTTCTCTTGGAGGTTGGCCCTAGTAGCATTCCCAGCGTTGCTTTTGCTCGTTATTCCTGGAATTATTTATGGCAAGTACCTTATCTATTTGTCAAACAAGTCTTATAAGGAGTACGGCAAAGCAAACACCATCGTAGAACAGGCTCTGAGCTCTATCAAAACAGTATATTCCTTCACTGCCGAGAAGGGAATCATTGAGAGATATTCAGCTATACTGGACAGAACTTCAAGGCTAGGAATCAAGCAAGGCATAGCCAAGGGTCTGGCTGTAGGAAGTACAGGTCTCTCTTTTGCAATATGGGCTTTTCTTGCTTGGTATGGAAGCCATTTGGTTATGTACAAAGGTGAAAGCGGAGGTAGGATCTATGCAGCTAGCGTTACCTTCATAATGAGTGGACTATCCCTTGGAGTGGCACTTCCTGACCTGAAGTACTTCACAGAAGCATCTGTTGCTGCTTCACGCATATTTGACATGACTGACCGGATACCATCCATTGATGGGGAAGACACAAAAGGATTAGTGTTAGAGCGCATAACTGGCAACATAGAATTTGAGCATGTCAAATTTACATACCCTTCACGTCCAGATGCTATTGTACTTAAGGAGTTCAATCTCAAAGTTGAAGCAGGGAAAACTGTCGCTCTAGTTGGTGCCAGTGGAAGTGGTAAATCCACTGCAATAGCATTGGTACAAAGATTTTATGATGCAGACGAAGGTGTTGTGCGGATTGATGGTGAAGACATAAGAAGCCTACAGCTGAAATGGATAAGAGGGAAAATGGGCCTTGTGAGTCAAGAGCATGCACTGTTTGGGACTTCTGTAAAGGAGAATATCATGTTTGGGAAGCCTGATGCCACAATGGATGAAGTAGTTGCTGCAGCCACTGCTGCCAATGCTCATAACTTCATAAGGCAGCTTCCTGAAGGTTATGAGACCAAGATTGGAGAAAGGGGGGCACTTTTATCAGGTGGACAAAAGCAGAGAATAGCCATTGCAAGAGCCATCATAAAAAATCCAGTAATTCTTCTACTTGACGAAGCAACTAGTGCTCTTGACTCTGAATCGGAGTCATTGGTTCAGAATGCCCTTGATCAAGCTTCCATGGGAAGGACCACATTGGTTGTTGCCCACAAGTTATCAACCATTCGAAATGCAGACCTCATAGCAGTCGTCAATGGCGGTTGTGTCATTGAAACAGGTACCCACGATGAACTCATGAACCGCCCAAATGGCTTCTATGCAAAATTAGCAAAATTACAGAGACAATGCAGCTATGATGACCAAGAACAAAATTCAGAACTGGGAAATTCTTCAGTCGGAAGAAGCAGTACCGGCCGATCAAGCACAGCTTGGTCAAGCCCTGCGATATTCCCTAAGTCACCGTTGCCTCATCATACCCCATCTCTCGCGTCTCACCCTTCACCTTCCTTTTCACGTCTTCTGTCTCTGAATGCCTCTGAATGGAAACAGGGTCTGATTGGAAGCCTCTCAGCTGTAGCCTTTGGTTCAGTTCAACCCGTATATGCCTTAACCATTGGGAGTGTGATTTCAGCATTTTTCGCTCAAAGCCATGAGGAAATGCGTCGAAGGATCAGGACTTATTGTTTGATTTTCTCTTGCCTCTCCCTTGCTTCTTTTATTCTCAATCTCCTTCAACATTACAATTTCGCTTGTATGGGAGAGAAGTTAACGAAAAGGGTCAGATTGCGCATGCTGGAGAAGATCTTAACCTTTGAAACTGCTTGGTTTGATGAGGAACAAAACTCTAGCGGAGCCTTATGCTCACGGTTGAGCAATGAGGCTTCCATGGTGAAGTCACTCGTTGCAGACCGAGCTTCCTTACTAGTTCAAACCACTTCTGCAGTAACAATTGCAATGATCATAGGACTTGTGGTGGCTTGGAAGCTTGCTCTTGTTATGATAGCAGTGCAACCACTTACAATCCTCTGCTTTTATACGCGAAAGGTTTTGCTCTCTACACTTTCAGCCAAATTTATTAAGGCTCAAAACCAAAGCACGCAGATTGCAGTGGAAGCAGTTTATAATCATAGAATTGTAACCTCATTTGGAAGCATGACAATAGTTCTGAAACTATTTGATGAGGCTCAGGAGGCACCAAGGAAGGAAGCGAGGAAGAAATCTTGGCTAGCTGGCATAGGAATGGGTTCTGCTCTGTGCCTAACGTTCATGTCATGGGCTCTGGATTTCTGGTTCGGTGGCACATTGGTGGAAAAGGGAGAAATATCATCAGGGGATGTGTTCAAGACATTTTTTGTATTGGTGAGCACTGGCAAGGTCATAGCTGATGCTGGAAGCATGACCTCTGACCTTGCCAAAAGCTCAACAGCAGTGGCATCCGTGTTTGAAATCCTTGACCGGCAATCACTAATTCCCAAGGCTGGAGATGGCACTAGTAGTGGGTCTAAGTTGGAAAAGATGAGTGGGAAGATAGAGATGAAGAATGTTGATTTTGCATATCCAAGCAGGAAAGAGGCCCCAATATTGCGCGAGTTTTGTCTGGAGGTGAAGGCCGGAACAAGTATTGGACTAGTTGGGAAGAGTGGGTGTGGAAAATCAACAGTGATAGCCTTAATTCAAAGATTCTATGACGTTGAGAGAGGGTACGTGAAAGTGGATGGCGTGGACGTAAGGGAATTAGACGTTCAGTGGCACAGGCAGCACACAGCACTTGTTAGCCAAGAGCCTGTGATATATTCTGGCAGCATACGCGACAACATTTTGTTTGGGAAGCAAGACGCTCCAGAGAATGAAGTGGTAGAGGCTGCAAGAGCTGCAAATGCCCATGAGTTCATTTCATCACTGAAAGATGGATATGAAACGGAATGTGGGGAAAGAGGAGTACAATTGTCGGGAGGGCAGAAGCAGAGAATAGCAATTGCAAGAGCCATAATTCGGAACCCAACCATACTGCTACTGGATGAGGCAACAAGTGCTCTGGACGTGCAATCAGAGCAAGTAGTGCAAGAAGCACTTGATAGGATTATGGTTCGGAGGACTAGCATTGTGGTGGCACACAGACTTAACACCATTAAGGAGCTTGACTCAATTGCCTATCTTGCAGACGGCAAGGTTCTGGAGCGAGGAACCTATGCCCAGCTTAGGCACAAGAAAGGTGCCTTCTTCAAACTTGCCAGCCATCAGTCCTAG 3696 0.4489 MGSLQKGEKRRKERGSIAIIFRYADWIDAVLMLMGALGAIGDGLCTNVLMVFVSRIMNSLGNGNNQRSRGNFMADVEKCSLYFVYLGLVAMVVAFMEGYCWSKTSERQVLRMRYKYLEAVLRQEVGLFDSLEAKTSEIINSISKDTSLIQEVLSEKVPLFLMHSSSFISGIAFSTYFSWRLALVAFPALLLLVIPGIIYGKYLIYLSNKSYKEYGKANTIVEQALSSIKTVYSFTAEKGIIERYSAILDRTSRLGIKQGIAKGLAVGSTGLSFAIWAFLAWYGSHLVMYKGESGGRIYAASVTFIMSGLSLGVALPDLKYFTEASVAASRIFDMTDRIPSIDGEDTKGLVLERITGNIEFEHVKFTYPSRPDAIVLKEFNLKVEAGKTVALVGASGSGKSTAIALVQRFYDADEGVVRIDGEDIRSLQLKWIRGKMGLVSQEHALFGTSVKENIMFGKPDATMDEVVAAATAANAHNFIRQLPEGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESESLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVVNGGCVIETGTHDELMNRPNGFYAKLAKLQRQCSYDDQEQNSELGNSSVGRSSTGRSSTAWSSPAIFPKSPLPHHTPSLASHPSPSFSRLLSLNASEWKQGLIGSLSAVAFGSVQPVYALTIGSVISAFFAQSHEEMRRRIRTYCLIFSCLSLASFILNLLQHYNFACMGEKLTKRVRLRMLEKILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRASLLVQTTSAVTIAMIIGLVVAWKLALVMIAVQPLTILCFYTRKVLLSTLSAKFIKAQNQSTQIAVEAVYNHRIVTSFGSMTIVLKLFDEAQEAPRKEARKKSWLAGIGMGSALCLTFMSWALDFWFGGTLVEKGEISSGDVFKTFFVLVSTGKVIADAGSMTSDLAKSSTAVASVFEILDRQSLIPKAGDGTSSGSKLEKMSGKIEMKNVDFAYPSRKEAPILREFCLEVKAGTSIGLVGKSGCGKSTVIALIQRFYDVERGYVKVDGVDVRELDVQWHRQHTALVSQEPVIYSGSIRDNILFGKQDAPENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMVRRTSIVVAHRLNTIKELDSIAYLADGKVLERGTYAQLRHKKGAFFKLASHQS 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1679 1231 Gene3D - 348 597 IPR027417 -
Glsi12g1679 1231 ProSitePatterns ABC transporters family signature. 1132 1146 IPR017871 GO:0005524|GO:0016887
Glsi12g1679 1231 Pfam ABC transporter 1014 1160 IPR003439 GO:0005524
Glsi12g1679 1231 FunFam Putative ABC transporter B family member 8 634 977 - -
Glsi12g1679 1231 CDD ABC_MTABC3_MDL1_MDL2 358 596 - -
Glsi12g1679 1231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 596 IPR027417 -
Glsi12g1679 1231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 985 1230 IPR027417 -
Glsi12g1679 1231 FunFam ABC multidrug transporter SitT 983 1231 - -
Glsi12g1679 1231 FunFam ABC transporter B family member 1 19 355 - -
Glsi12g1679 1231 CDD ABC_6TM_Pgp_ABCB1_D1_like 32 331 - -
Glsi12g1679 1231 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 993 1229 IPR003439 GO:0005524
Glsi12g1679 1231 Gene3D ABC transporter type 1, transmembrane domain 20 897 IPR036640 GO:0005524|GO:0016020
Glsi12g1679 1231 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524|GO:0016887
Glsi12g1679 1231 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
Glsi12g1679 1231 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1679 1231 MobiDBLite consensus disorder prediction 603 628 - -
Glsi12g1679 1231 PANTHER ABC TRANSPORTER B FAMILY 7 680 IPR039421 -
Glsi12g1679 1231 FunFam ABC transporter B family member 4 348 605 - -
Glsi12g1679 1231 Pfam ABC transporter transmembrane region 669 938 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1679 1231 Pfam ABC transporter transmembrane region 33 297 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1679 1231 SUPERFAMILY ABC transporter transmembrane region 20 342 IPR036640 GO:0005524|GO:0016020
Glsi12g1679 1231 SUPERFAMILY ABC transporter transmembrane region 655 968 IPR036640 GO:0005524|GO:0016020
Glsi12g1679 1231 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 668 955 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1679 1231 Gene3D - 983 1231 IPR027417 -
Glsi12g1679 1231 SMART AAA_5 1020 1192 IPR003593 GO:0016887
Glsi12g1679 1231 SMART AAA_5 385 577 IPR003593 GO:0016887
Glsi12g1679 1231 CDD ABC_6TM_Pgp_ABCB1_D2_like 657 973 - -
Glsi12g1679 1231 Pfam ABC transporter 376 525 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1679 Glsi-ChrGlsi12 33329023 33334937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1679 37 597 Calmodulin-binding Proteins AT2G36910 36.170 2.59e-104 357