Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1675 ATGGATAACGTTCGAGTTTCGGAATCCCAGGAGCTGGCCATGGTTTTGGAGGCTTTCGACCTCGACCAGGCTCTCGCTGCGGCCGATGAATCACGTCGCCGATTTGTGGCGTCCAACTGTTTCGTGTCAAACTTGCCGGCGGTTCAACTTCCAGACTCGGGCGATCCCGATGTTTGTTCGGTTTGCATGGAAAGGTTTGATCATCACAATTCTGAGGAAAACAAACGAGTACCGTGCGGCCACGTGTACCACGCTACCTGCATAGCCGCCTGGCTATCTCACTGCAACTCTTGTCCCCTGTGCCGGGCATTTATAGTGAATCTTGGAGACATACTGGACCGCTGGAGCAACTGTATTTTCAACAAATCAAAATTTCAAGCTTTAGCTTCTTGTTCTCCTTTGTCTTCTGCTAATGATGACATTCCCAAGGATAAAGACTTATTAGGATGGAGTGGTGAAGGATTGGTTGTTGATAGCGTTCTCCTGGTTGATGCAGAAGTAACTTGGGTTTCATTCTTTTGTTTATTAGATGAGCTAAGTGTTCAAATAGTCACACCTTATGCTCAGGTTGCAAACCCAGGGTCCACAATCGGTGCCCTACTTGTAGGCATGAACTTGGCAATATCAAATGTCTGGCATTGGAGAAGGTGGCTGCATCTTTGGAACTTTCCTGTAAATATCAAGATTGCATATTTGGAGCGTAGTCACGATTGTGTAGTGGAGTGTTTTCAAACTTGCATAGCAGAAAGTAATCCTTCCAAGTTTCCTCCTATCTTATGCCGAGTTTATCTAAACCAGCGCTACAAGGATACTCATGCTGAGTATATACAAGAAACAGCAAGCTTGAGTTGCCATCTGCGCAGACTGTAG 870 0.4598 MDNVRVSESQELAMVLEAFDLDQALAAADESRRRFVASNCFVSNLPAVQLPDSGDPDVCSVCMERFDHHNSEENKRVPCGHVYHATCIAAWLSHCNSCPLCRAFIVNLGDILDRWSNCIFNKSKFQALASCSPLSSANDDIPKDKDLLGWSGEGLVVDSVLLVDAEVTWVSFFCLLDELSVQIVTPYAQVANPGSTIGALLVGMNLAISNVWHWRRWLHLWNFPVNIKIAYLERSHDCVVECFQTCIAESNPSKFPPILCRVYLNQRYKDTHAEYIQETASLSCHLRRL 289
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1675 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 106 IPR013083 -
Glsi12g1675 289 ProSiteProfiles Zinc finger RING-type profile. 59 102 IPR001841 -
Glsi12g1675 289 Pfam Ring finger domain 58 102 IPR001841 -
Glsi12g1675 289 SMART ring_2 59 101 IPR001841 -
Glsi12g1675 289 SUPERFAMILY RING/U-box 53 108 - -
Glsi12g1675 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 37 102 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi12g1675 Glsi-ChrGlsi12 33302033 33310267 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1675 42 102 C3H Transcription Factor Family AT3G60080 42.254 1.44e-10 58.9