Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1654 ATGCTAGCAGTGTTTTTTAACACAAAGGATTACATAGTAATGTCTTGGCTCTTCCCAACTCTTCCAAAGATTATGGGCACCTCCTCTGCATCTTCAATTATCTGCCTATATCTAGTTTCAGTTAAATTTTCTCTAAGTTCTTTCGTTCTTATTGCCCATTCCTGGAACATTACAAGGCCAGTGAAACGGGTTACTATTTGGGGGAGAAACATACTAAAATGCCCATGCACACCAACCCCATCCCAAACTGCCCCCATTAAAAATTTCAAAGCTTTCAACCCTCGAATTAGCATTTTTGCTTCAGAATCAACCATGAATCAACTGGGTTTTCGTCTTTCGGTTCTCTATGTCATACTATTCCATGCCAGAGCACAGACTCCAGACGGTGCAGCATCTTCAATTGATGCCATCTCTAATTTCCAACCCAGCCTAGCTGTTGTCATAGGAATCCTCTGTCTCATGTTTTCATTGACTTTCATTCTTCTCATGTATGCCAAGTTCTGTCAAAGGAGAGCTTCAGCTCATGTCGACCCAGAAAATCGCCCTCCACTTCTGAGATCAACGTCTAGATTCTCAGGAATTGACAAGACGGTCATAGAACAACTCCCCTTCTTCAGATTTTCTTCCCTCCGAGGGTCAAAGGAAGGGCTCGAATGTTCAGTGTGCCTATCAAAGTTCGAAGATATTGAAATCCTCAGGCTCCTCCCTAAGTGCAAACATGCTTTTCATATTGATTGCATCGACCATTGGCTTGAAAAACACTCGAGCTGTCCTCTTTGTAGGCACAAGGTTAATCCTGATGACCAAACTATGTTTACGTATTCAAACAGTTTGAGGTTCCTCGCTAACCAGTCAGAGCTGGATCAGGAATCCAACGTAGAGCTTTTTGTCCAGAGAGAAGAAGAACATCACGGGTCATCCAGATTCAGTATTGGAAACAGCTTTAGGAAGATTGAAAAGGATATTAAGGAGGAAGAATTGCCAATCCAGAGAGAAGCAGAAACTAGTTATGGTGATCATAAGTTATATCATAAGCATAACCACAAGATTACTGTATCTGATGTCGTATTCAAGCACCGTTGGAGCAACGTGACCTCTTCAGACCTCATGTTCTTGAACTCAGAGATGCTTATTTCTATGCCAAGTAAAAGATTCAGTAATTGGGAATCAAATGCTGACCAGATGCCAGCCACGAGGGCAGTCGAAAATGAGCAAATCATCAACATAAAGGAGGAGATGGAGAGGAAGATTTCCTTTGAGACCAAAGTCGGTGCACTCAACAAAATTAACTCAGTTTTAGAGATTAGTGCTCCTTTTACATCAGATTCTGCAGGAACTTCTAGTCATACATCAAAATATGTGAATCCGGGTGAGAAAAGATCAATGTCCGAAATCACTGGTGTCTCCAGATTTGGAGATATGGGCATGAAAAACAGGATCTTCAAAGAAGAATCTTTGCTTGAAAATAATGTTAAAGAGGAAAGAAAGAGGCAGCTATGGTTGCCAATCGCGAGAAGAACCGTTCAATGGTTTGTGAATAGAGAAAGAAGATCTCAGCAATATCAGAATAAACAAAAGCCATTAAACGTATAG 1593 0.4112 MLAVFFNTKDYIVMSWLFPTLPKIMGTSSASSIICLYLVSVKFSLSSFVLIAHSWNITRPVKRVTIWGRNILKCPCTPTPSQTAPIKNFKAFNPRISIFASESTMNQLGFRLSVLYVILFHARAQTPDGAASSIDAISNFQPSLAVVIGILCLMFSLTFILLMYAKFCQRRASAHVDPENRPPLLRSTSRFSGIDKTVIEQLPFFRFSSLRGSKEGLECSVCLSKFEDIEILRLLPKCKHAFHIDCIDHWLEKHSSCPLCRHKVNPDDQTMFTYSNSLRFLANQSELDQESNVELFVQREEEHHGSSRFSIGNSFRKIEKDIKEEELPIQREAETSYGDHKLYHKHNHKITVSDVVFKHRWSNVTSSDLMFLNSEMLISMPSKRFSNWESNADQMPATRAVENEQIINIKEEMERKISFETKVGALNKINSVLEISAPFTSDSAGTSSHTSKYVNPGEKRSMSEITGVSRFGDMGMKNRIFKEESLLENNVKEERKRQLWLPIARRTVQWFVNRERRSQQYQNKQKPLNV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1654 530 ProSiteProfiles Zinc finger RING-type profile. 219 261 IPR001841 -
Glsi12g1654 530 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 130 516 - -
Glsi12g1654 530 MobiDBLite consensus disorder prediction 440 457 - -
Glsi12g1654 530 SUPERFAMILY RING/U-box 198 267 - -
Glsi12g1654 530 FunFam RING-H2 finger protein ATL43 194 268 - -
Glsi12g1654 530 SMART ring_2 219 260 IPR001841 -
Glsi12g1654 530 CDD RING-H2_EL5-like 218 261 - -
Glsi12g1654 530 Pfam Ring finger domain 218 261 IPR001841 -
Glsi12g1654 530 MobiDBLite consensus disorder prediction 440 459 - -
Glsi12g1654 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 270 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1654 Glsi-ChrGlsi12 33167523 33170485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1654 110 519 C3H Transcription Factor Family AT4G28890 47.297 2.11e-112 338