Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1653 ATGAAATATTGTGAATTGGGATTGATGGGGGCGAGCATTGTGCGAAGCTGTCCCATTGTGTTTGGGAAGGATAAGCATGCTCCTATTTTGAAAAGTTTCAAATTTCCAATTACTTGCTCTCTGCTCTCACTGGCTAGTAGCTACCAATTCACTGCCCATGCTACAATGAAGAATCATCCTGGGCATGTTCTCCACCCAAGATCACTAGTCCACTCTCGCTTTCAAAACTACACGCCTAATCCACACAATCCCACCATTTTCACCCCTACCAAAGGTGAGAGGCCAGATAGGTCACTGCCGCTGCCACAGGGCAGTATTGCGGCTCACTGTTTTAGGAAGCTGTTGAACTCTCTTCAGCCTCATGAATTTTTGGGCAATTCAAGCATCTGGATTTTCTTCAAGTTATTTCTTTCAGTGATGGGTTGCGTTTATTCAAGGGTTTGCATCGGGGAGGTTTATACTCCAAGAAATTCTAGGATCAATGAAGGCCGAAATGCGAGAACCAGTGAGGCTCCCTTGTTCTCTCCTGCGTCCTCAGGTGTTCAGGAAGGTGAAATTAGAGACCAGTTAAATCAATTGACCTTAACCGGCGACTCTGAGGTAGGCATCACAAGGCTATCTAGGGTTTCGGCGCAGTTCCTACCTCCCGATGGCTCGCGAACCGTGAAGGTCCCTTCGGGACACTTTGAATTGCGTTATTCGTACTTGTCTCAGAGAGGTTATTACCCCGATGCTCTTGATAAGGCTAACCAAGACAGTTTTTGCATTCACACCCCGTTTGGTACAAACCCTGATGACCATTTCTTTGGAGTTTTCGATGGGCATGGAGAGTTTGGAACCCAGTGTTCGCAGTTCGTGAAGCGAAAGCTATGTGAGAATTTGCTTAGGAATAGTAGATTTCGTGTAGATGCTTTGGAGGCCTGTCACGCAGCGTTCTTGGCTACAAACTCGCAGTTGCATGCTGATGTTTTAGATGATAGCATGAGTGGTACTACAGCAATTACAGTATTGGTTCGGGGTAGGACTATATACGTAGCTAATTCCGGTGATTCTAGGGCAGTGATTGCAGAGAGGAGAGGGAACGGTATTGTGGCAGTGGACTTATCCATGGATCAAACACCTTTTAGGCCAGATGAACTAGAAAGGGTCAAGCTTTGTGGAGCTAGAGTTCTTACACTGGATCAGATTGAAGGGCTAAAGAACCCAGATGTTCAATGTTGGGACACAGAAGAAGGAGATGATGGTGACCCACCTAGATTGTGGGTGCCGAATGGGATGTACCCTGGTACAGCTTTCACGAGAAGCATAGGTGATTCAATTGCCGAGACTATTGGGGTCGTTGCTACCCCTGAAATTATTGTTTTCGAGCTCACACCAAATCACCCTTTCTTTGTGCTTGCCAGCGATGGTGTATTTGAGTTTCTATCTAGCCAGAGTGTGGTTGAAATGGTTGCGAAATTCAAAGATCCTCGTGATGCTTGTGCTGCAATTGTGGCTGAATCTTATCGACTTTGGCTACAGTATGAAACTCGTACAGATGACATTACAGTCATTGTTGTTCATGTTAATGGACTCACCGATCCTGCCATTGGTCAATTGGCAAGTTATAGCGATGTTTTGATGCCTCAAGTTGTTGAGATGACGGGATCAGAATCTCCTTCCACCTTTAGCTGGAACTCCAAGAACCATCGTGCAAGGCATGAATTATCAAGGGCACGTCTCCGAGCAATTGAAAATTCCCTAGAGAATGGGCAAGCTTGGGTTCCTCCATCTTCAGCTCACAGGAAGACATGGGAGGAAGAAGCACACATTGAGCGGGCATTGCATGATCATTTTCTCTTCAGAAAACTCACTGATTCTCAGTGTCATGTTTTATTGGATTGCATGCAAAGAGTTGAGGTTCAACCTGGGGATGTTATAGTCAAACAGGGTGGTGAAGGTGACTGTTTCTATGTTGTTGGTAGTGGAGAATTTGAGGTCTTGGCAACTCAGGAAGAGCAAAATGGGGAAGTACCTAGGGTTTTGCAGCGCTACACGGCTGAAAAATTATCTTGCTTTGGAGAACTTGCTCTAATGTATAATAAACCACTCCAAGCCTCTGTACGTGCTGTAACAGAAGGAACACTCTGGGCTTTAAAGCGAGAAGACTTTCGAGGAATTTTGATGTCGAAGTTCTCAAACTTAGCATCCTTGAAGTTGCTTCGGTCTATAGATCTTCTTTCAAGGTTGACAATATTACAACTCAGTCAGATCTTGGACTCCCTTTCTGAACTTTCCTTTTCAAATGGACAGACAATAATTGATAAAAATGAAGTCCTTGCATTGTACATTATCCAGAAGGGACAAGTGAAAATCACTTTTGATGCAGATTTATTGAGGAGTCCAAATGCCTGCAGCCTGAAGCCTGACAATCAAAGTGAGAATGATGATTTACAGAGCAGAAAAGAACTGTCAGTAGAGAAGCCAGAAGGAAGCTATTTTGGTGAATGGACACTTCTTGGTGAAAATATTGGTTCCTTAAGTGCTGTTGCTGTGGGTGATGTTGTATGTGCTGTATTAACAAAGGAAAAATTTGAATCAGTAATTGGCCCCTTACAAAAGCTCTCTCAGGAAAATCAGAAGTCAAGGGATAATTCATCAGACTGTTCCAAGGACTCAACTAAAAGTTTAAATTTTTCGTCCCTTGATAATGTCCAGCTCTCAGATTTGGAGTGGAGAAAGAGTGTATATACCACTGACTGCTCTGAGGTCGGGCTTACACTTTTAAGAGACTCAGAAAATTTGCTTACTTTGAAGAGATTTTCTAAGCCAAAGGTGAAAAGGCTGGGAAAGGAAGCGCTAGTGTTGAAAGAGAAAAATTTGATCAAGAGCATGAGCTCTTCAGCTTGTGTACCGCAGGTTCTGTGCACTTGTGCTGATCGAGTATATGCTGGGATACTACTAAATACACGCCTTGCTTGCCCATTGTCTTCCATCCTTACAAGTCCTTTTGGTGAATCATCAGCACGATTTTGTGCTGCTTCTGTTGTTACTGCCTTAGAAGACTTGCATAAGAATGGTGTTCTCTACAGAGGTGTGTCACCTGATGTTCTGACTTTGGACCAAACTGGAGCTATACAGCTAGTGGACTTCAGATTTGGGAAGAAGCTCTCAGGTGAAAGAACGTTCACAATTTGTGGAATGGCAGACTCTTTAGCTCCGGAGATTATTCTGGGAAAAGGCCATAGGTTCCCTGCTGACTGGTGGGCATTGGGCGTTCTGATTTATTTTATGTTACGAGGTGAGATGCCTTTTGGATCATGGAGAGAGAACGAGCTTGACACAGTTGCTAAAATTGCAAAACGGAAGCTAAACCTTCCAGAAACTTTCAGCCCTGAGGCTATTGATCTCATCACTAAGTTACTTGACGGTGAGGAAAACACTAGACTTGGTAGCCAAGGTCCTGATTCAATCAAAAGTCATCCTTGGTTTAATGGTGTTGAATGGGATGGGATTAGAAACCATACCTTTCCTGTTCCTCCAGAAATTACTTCTCGTATAGCTCAATACTTGGAAATTCATTCTGAGGATTGCACTGTTTCTCAAGGTTCCCCATCGCAGGAGGTAGAAGAACTTAACGCTCCTGAATGGCTTGAGGACTGGTAG 3645 0.4395 MKYCELGLMGASIVRSCPIVFGKDKHAPILKSFKFPITCSLLSLASSYQFTAHATMKNHPGHVLHPRSLVHSRFQNYTPNPHNPTIFTPTKGERPDRSLPLPQGSIAAHCFRKLLNSLQPHEFLGNSSIWIFFKLFLSVMGCVYSRVCIGEVYTPRNSRINEGRNARTSEAPLFSPASSGVQEGEIRDQLNQLTLTGDSEVGITRLSRVSAQFLPPDGSRTVKVPSGHFELRYSYLSQRGYYPDALDKANQDSFCIHTPFGTNPDDHFFGVFDGHGEFGTQCSQFVKRKLCENLLRNSRFRVDALEACHAAFLATNSQLHADVLDDSMSGTTAITVLVRGRTIYVANSGDSRAVIAERRGNGIVAVDLSMDQTPFRPDELERVKLCGARVLTLDQIEGLKNPDVQCWDTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVATPEIIVFELTPNHPFFVLASDGVFEFLSSQSVVEMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIVVHVNGLTDPAIGQLASYSDVLMPQVVEMTGSESPSTFSWNSKNHRARHELSRARLRAIENSLENGQAWVPPSSAHRKTWEEEAHIERALHDHFLFRKLTDSQCHVLLDCMQRVEVQPGDVIVKQGGEGDCFYVVGSGEFEVLATQEEQNGEVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTEGTLWALKREDFRGILMSKFSNLASLKLLRSIDLLSRLTILQLSQILDSLSELSFSNGQTIIDKNEVLALYIIQKGQVKITFDADLLRSPNACSLKPDNQSENDDLQSRKELSVEKPEGSYFGEWTLLGENIGSLSAVAVGDVVCAVLTKEKFESVIGPLQKLSQENQKSRDNSSDCSKDSTKSLNFSSLDNVQLSDLEWRKSVYTTDCSEVGLTLLRDSENLLTLKRFSKPKVKRLGKEALVLKEKNLIKSMSSSACVPQVLCTCADRVYAGILLNTRLACPLSSILTSPFGESSARFCAASVVTALEDLHKNGVLYRGVSPDVLTLDQTGAIQLVDFRFGKKLSGERTFTICGMADSLAPEIILGKGHRFPADWWALGVLIYFMLRGEMPFGSWRENELDTVAKIAKRKLNLPETFSPEAIDLITKLLDGEENTRLGSQGPDSIKSHPWFNGVEWDGIRNHTFPVPPEITSRIAQYLEIHSEDCTVSQGSPSQEVEELNAPEWLEDW 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1653 1214 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 592 1178 - -
Glsi12g1653 1214 Pfam Protein kinase domain 916 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1653 1214 Pfam Protein phosphatase 2C 259 501 IPR001932 -
Glsi12g1653 1214 SMART serkin_6 910 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1653 1214 MobiDBLite consensus disorder prediction 1191 1214 - -
Glsi12g1653 1214 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 227 524 - -
Glsi12g1653 1214 Gene3D Jelly Rolls 729 880 IPR014710 -
Glsi12g1653 1214 Gene3D Jelly Rolls 587 728 IPR014710 -
Glsi12g1653 1214 ProSiteProfiles PPM-type phosphatase domain profile. 232 522 IPR001932 -
Glsi12g1653 1214 SUPERFAMILY cAMP-binding domain-like 731 865 IPR018490 -
Glsi12g1653 1214 CDD PP2Cc 248 522 IPR001932 -
Glsi12g1653 1214 SMART cnmp_10 739 877 IPR000595 -
Glsi12g1653 1214 SMART cnmp_10 613 736 IPR000595 -
Glsi12g1653 1214 Gene3D - 227 523 IPR036457 -
Glsi12g1653 1214 ProSiteProfiles Protein kinase domain profile. 903 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1653 1214 Gene3D Transferase(Phosphotransferase) domain 1 988 1175 - -
Glsi12g1653 1214 ProSiteProfiles cAMP/cGMP binding motif profile. 739 879 IPR000595 -
Glsi12g1653 1214 SMART PP2C_4 228 520 IPR001932 -
Glsi12g1653 1214 CDD CAP_ED 613 722 IPR000595 -
Glsi12g1653 1214 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 587 727 - -
Glsi12g1653 1214 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 729 878 - -
Glsi12g1653 1214 Pfam Cyclic nucleotide-binding domain 632 723 IPR000595 -
Glsi12g1653 1214 Pfam Cyclic nucleotide-binding domain 758 862 IPR000595 -
Glsi12g1653 1214 SUPERFAMILY Protein kinase-like (PK-like) 901 1189 IPR011009 -
Glsi12g1653 1214 MobiDBLite consensus disorder prediction 798 817 - -
Glsi12g1653 1214 CDD CAP_ED 739 871 IPR000595 -
Glsi12g1653 1214 PRINTS cAMP-dependent protein kinase signature 634 648 - -
Glsi12g1653 1214 PRINTS cAMP-dependent protein kinase signature 858 870 - -
Glsi12g1653 1214 PRINTS cAMP-dependent protein kinase signature 649 663 - -
Glsi12g1653 1214 PRINTS cAMP-dependent protein kinase signature 684 693 - -
Glsi12g1653 1214 ProSiteProfiles cAMP/cGMP binding motif profile. 613 722 IPR000595 -
Glsi12g1653 1214 Gene3D Phosphorylase Kinase; domain 1 902 1177 - -
Glsi12g1653 1214 ProSitePatterns PPM-type phosphatase domain signature. 268 276 IPR000222 GO:0043169
Glsi12g1653 1214 SUPERFAMILY cAMP-binding domain-like 579 723 IPR018490 -
Glsi12g1653 1214 SUPERFAMILY PP2C-like 222 524 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1653 Glsi-ChrGlsi12 33153971 33165157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1653 140 1214 PP2C-type Phosphatase Gene Family AT2G20050 69.280 0.0 1520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Glsi12g1653 Pkinase 1.9e-29 CL0016