Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1644 ATGTCTGTGCCATTAAAGCACGACTATGTAGACTTGGCAGAGCTTCCTTCAATGAAAAGCTCTGACAAGTTTTCTCAGAGGAGCAGTGGCTTGAACCTCAAGGCTACCGAGCTCAGACTAGGCCTACCTGGGTCAGAGTCACCAGATAGGGATGGTGGTGGTGGTGGTGGTGGTGTTGGGGAGGGCAATAACGTGTACCCAATAAGCATGCTCAAGATTATGGTGTCTGGGGCCAAGAGGGGATTCTCGGACACCATTGATGGTGGTTCTGGGAAGTGGGTTCTGTCAGGGAATGGTGGATCTGAGGTGGGTTTGGGTAAAGATGGTGGCTTGTTCTCTCCCAGGGGTGTCAGTGCTGGGAAGGCTCTTACTGGTCCTGAAAGCAGTAACCCACAAACGGGTTTGGGTGCCGCCGTCGTGAAAGATAGTATCCCACAGTCGCCAAAGCCATTGCATGAGAAGAAGCCCCAGATGTCTGCTCTCTCTGCAAAGGCACAAGTTGTAGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCCATGACTAGTCATCCTCAAAAGAACGAGGATAATACAGAAGCCAAGTGTGGATGTCTTTATGTAAAAGTCAGCATGGATGGTGCCCCCTACTTGAGGAAAGTTGATCTCAAAAACTTTGCCAGTTACCAGCAACTGTCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCAGTCAGTGTGGATCTCATGGAGTCTCAAGTCATGATAATTTGAGCCAGAGTAGTTTGATGGATCTCCTTCATGGTTCAGAATATGTGCTTACCTACGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTGCCCTGGGAGATGTTCACCAACTCTTGCAAGAGATTGAGGATAATGAAGAGTTCTGAAGCAATTGGGTTAGCACCAAGAGCAATGGAAAAGTGTAGAAGCCGCAACTAG 957 0.4796 MSVPLKHDYVDLAELPSMKSSDKFSQRSSGLNLKATELRLGLPGSESPDRDGGGGGGGVGEGNNVYPISMLKIMVSGAKRGFSDTIDGGSGKWVLSGNGGSEVGLGKDGGLFSPRGVSAGKALTGPESSNPQTGLGAAVVKDSIPQSPKPLHEKKPQMSALSAKAQVVGWPPIRSFRKNSMTSHPQKNEDNTEAKCGCLYVKVSMDGAPYLRKVDLKNFASYQQLSSALEKMFSCFTISQCGSHGVSSHDNLSQSSLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTNSCKRLRIMKSSEAIGLAPRAMEKCRSRN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1644 318 ProSiteProfiles PB1 domain profile. 198 300 IPR000270 GO:0005515
Glsi12g1644 318 MobiDBLite consensus disorder prediction 35 61 - -
Glsi12g1644 318 FunFam Auxin-responsive protein 193 310 - -
Glsi12g1644 318 Gene3D - 192 311 - -
Glsi12g1644 318 SUPERFAMILY CAD & PB1 domains 198 299 - -
Glsi12g1644 318 Pfam AUX/IAA family 36 309 IPR033389 -
Glsi12g1644 318 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 31 305 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1644 Glsi-ChrGlsi12 33088014 33090192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1644 174 316 B3 DNA Binding Superfamily AT5G62000 26.573 1.98e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi12g1644 AUX_IAA 2.3e-86 CL0072