Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1642 ATGAATAGAGGTGTGTTGCAGAGCCCACCGGTGCAACAAATGATGGCCGGAAACCCTAACTGGTGGAACATCAATAGCATGCGACCTCCTGCTCAACAACCCTCTCCTTTCTTCTCCACTCCTTCCAACTTTCAAACTCCATACGCACCCACTTCTTCATCCACTCTTCCTCTTCCTTCTTGGCATGATTACAATCAAGAGCTGCCAGAGTCATGGAGCCAACTACTCATGGGTGGATCGGTGGCTGAAGAAAATAGGGGAAATATGGGCCAGTTTCAGGCCAAGAAGTTGAACTGGGATGAGCAAATGTTCAGCCAAGCTCCAAATGCTGCGCTCGTAGATATTAAACAAGAAAGCTCAATGAACAGCTATTATGGACATGGAAATGAAGAATTTCAGGCAGCAAAACCCGCTTGTTGGTCTCAAATAGCGCCAGCTTCTTCCCCCAAATCCTGCGTCACAAATTTCAGTAGCAACATGTTGGATTTCTCTAACAATCACACTGATGCGAGGCATCCGCTACCAGATCGATCTTCTGAGTGCAACAGCAGTGCAGCTGGTGGGGCACTCAAAAAAGCTAGGGTTCAGCCCTCTACAACTCAGCCTACCTTCAAGGTTAGGAAGGAGAAACTGGGTGACAGAATCACAGCCCTTCATCAGCTAGTTTCCCCATTTGGGAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGGTACATCAGATTCCTTCAGAGTCAAATCGAGGCCCTTAGCTTACCATACTTGGGCAGTGGATCCGGAAACATGAGGCAGCAGCAACAATCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGGTGAATGAAAACTGCTTGAAAAGGAAAGCAGTTGGGAAACTGCAGGATTCTCAAGAAGAGCCAGTGAAGAAGGACCTGAGAAGTAGAGGCTTGTGTCTGGTTCCAGTCTCATGCACAGTACAAGTTGGGAGTGACAATGGTGCTGACTATTGGGCTCCTGCTTTCAGCGGAGGCTTTCTGTAG 1038 0.4778 MNRGVLQSPPVQQMMAGNPNWWNINSMRPPAQQPSPFFSTPSNFQTPYAPTSSSTLPLPSWHDYNQELPESWSQLLMGGSVAEENRGNMGQFQAKKLNWDEQMFSQAPNAALVDIKQESSMNSYYGHGNEEFQAAKPACWSQIAPASSPKSCVTNFSSNMLDFSNNHTDARHPLPDRSSECNSSAAGGALKKARVQPSTTQPTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGNMRQQQQSVQGEKNCIFPEDPGQLVNENCLKRKAVGKLQDSQEEPVKKDLRSRGLCLVPVSCTVQVGSDNGADYWAPAFSGGFL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1642 345 CDD bHLH_AtbHLH_like 202 252 IPR045239 -
Glsi12g1642 345 Gene3D - 203 270 IPR036638 GO:0046983
Glsi12g1642 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Glsi12g1642 345 FunFam transcription factor bHLH68 isoform X1 202 255 - -
Glsi12g1642 345 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 64 327 - -
Glsi12g1642 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 255 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1642 Glsi-ChrGlsi12 33062577 33065447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1642 1 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 46.499 2.69e-68 216