Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1641 ATGACGATCGCCACTTCAACTCGGATTCTTCGGCACACCACCGACTTCATCTCCGACGTTCTTTCCCAATCCGAACTCCGCCGCCGCCTCATTGCCACCATAATCCGTGAGACTTCAATTTCCAATCAAATCACCCTCAAACACCTCAACCTCGCCGCTAACACTCTAGAAAATGCTATTTCCGTCTCCAGCCCCACCATCCGATCCTCCTCGCTCAACCTCGCCGAAAAGCTCCTTCTTCCTCTCCCTGAAACCCCCATTTCTTCTTTCCTTCTCTGTCTCATTTACAGCCTCTGCAACCGTCAAATTGAAGCCGCCTTAAGTCTCCTCCGAATCTTCGACTTAAACCCTCCGTTGGCCCGATCAGAAATTGCGCCTATTCTTTACGAGAAGCTATTTTCTCTCCACCTCCTCCCTGTTTTCCGACGCTTCGATGAACAGAGAGCAAAAATACTGCCATCAACATCGGCAAAATTGGCAAGTGATACTTCTGATTATTCAATTTCAGACGAATCTGTAGTCTTACCCTCCTCGAAATTATTGTCTCGGATGAGCGAGGATCAAGCTTCGAAGCTAAGGGAGTTGGAGAGAAACTATGAAGAGGCTCTTGATGACAACTGCAGGGTTGTTGCCGAGTACTTCAAAGAAGTTTTGGTAAATAGTAATGGAAACCCATCAATTAATCCCCCGCTTTTGATACTGAAGAGCAGCAGAGAAGATGAAAATATGGAGAACATTCAGCAGGAGAAAATGGAAACAAAATTGCCTTTGTTGATGAACGGACGGTATAATCCAATATGGGCCAAAATGGAAACATCTTTTGAACATTCGAGCAGCAGTCTCAGCAGCAATTCCTTGCATGCACCGTTCTATCCTCAAAGAGTCTCTCCCAAAATCCTCAAACACCAAAAACCTTCTGAAAACCTGTCCATGCCATCATCTTCAAACTCAGGCGCTGAATTTGAGTCTTCGTCGAATGAAAATTTACCTTGTTTTTCTTCAGAATCTGAGGCAGAAACCATAGAAATATTCATTCATCATTGTTTTGTTTCTGCTGCTTTTTCTCAAACTTGGATCCTTTCTGTTCCTAGTTCCCCAGATTATCCCATGGCGGATTATGATAACCAACCGCATGGAAGTGGAAAGTTTACGCCTCCCAAGGACTTTGTCTGTCCAATAACTAGCAATCTTTTTGATGATCCAGTGACTCTTGAGACCGGGCAGACATATGAACGTAAAGCTATTGAAGAATGGTTCAATAGGGGGAACTCAACGTGTCCAATCACCCGCCAGAAGCTGCAAAATACCCAATTACCTAAAACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACACAACCCCAACTCAATCCCATCGCCATCTGAGAGTCCATATGCTGGAACTGAGGTAGCAGTCAAGTCAATAGTGCCTTCAACTTCTCCTAACAGTGTTATATCACAAGCCACCGTTGATGGGATGATTGGTGAGTTACGTCAGGCAATTAACAACCTGTATATGTCAGAGATTCTTGAGGAATCCGAAATGGCTGTGCTTCAAATTGAGCAGTTATGGAAAGAAGTAAATTTAGGTGTGGATATCCAGAGCATGCTATCAAAGCCTCCAATCATTAATGGGTTTATGGAGATTCTTTTTAATTCTGTTGATCCTCAGGTGCTGCAAGCAACAGTTTTTCTTCTGGCTGAGATGGGTTCTAAAGAAAATGCTGTTATTCAGACGCTCACCCGGGTGGACTCTGATGTAGAATGTATTATGGCTCTTTTCAAGAAAGGGTTGACGGAGGCTGTTGTATTGATTTATCTCCTAAAACCTTCCTCTACGAGTCTTGCAGAAATGGCCATATCGGCGTCTCTCATTGCAGTTTTCAATAAGAAAGAGGAAGACTTGCTTAAGATGTGCATAAATCCTAAGACAGCTGCGGTTCTTTTACTGGCACAGATTCTTGGAAGCAGTGACGAGAGAATTGCATCTTCTGTTGCCAAGAATTTGATAACTGAAAAAGTAATTGGAAGTATTGTGGGCAGTTTAGGAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTAAGATGCACGCAGGAGGATGGGACTTGCAGATACACCATTGCTGAAAAAGCTGAGCTGTCTCCCATTCTGGAAAGCTTCATTGGTGCAACTGATGCAGAACGTTTCAATATTGTTCAATTTTTCTCGGAGTTAGTCAAATTAAATAGGAGGACATTCAATGAACAAATTCTCCAGGTTATAAAGGAAGAAGGTGCTTTCAGTACAATGCATACTCTCCTCATTTATCTGCAGACAGCCCTTCAGGACCAATGTCCAGTCGTGGCTGGCCTCCTACTCCAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGTATATACCGCGAAGAGGCAATAGATACTCTTATATCATGCCTCAGAAACACTGATTTCCCTGCTGCCCAAGTAGCAGCTGCTGAGACAATTGTGTCATTGCAAGGGAGATTCAATTTCATTGGAAAGCCTCTTACCAGAGAAGTCCTTCTTATACGTGCTGGCCTTGACAGAAGTTATAAAAATCTTGTTCAGATGGAACAGATCAGCAATTTCTGCGGAGAATTTGAAACGACTCCTGAAGAAGAGAAGGCAGCTGATGATTGGGAAAAAAAAATTGCGTCTGTTCTAGTTGGCCACGAGTTTGGTCTACTTTTTGAGGCTTTAGCAGATGGCTTGAAGAGCCGAAGTGCAGAACTATGCTCAGCATGTTTTATATCAGCTACATGGCTCACATACATGCTCAACATTCTCCCAGATACAGGAATACAAGGAGCAGCCCGTGTCTGCTTGCTCAAGCCCTTCATATCTATATTTAAATCTGCCAGGGGCACGGAAGACAAAATCCTTTCTATGCTTGCCCTGAATAGCTTTCTTCATTACCCTGATGGGTTGCGTGATCTAACTTCCTACACCAAGGATGTCTCAAAAGGTTTGAGAGAGCTTAAGAGATCCTCCCCCCTTGCATCTCAAATGCTTAAAGTTTTGGTTGAAGAGAATGAATCTAAAGCAGACATCTGGATGCATAATGAGTTAATCCAGGTAGATTGCAGTGAGAATGGAGAAGTGCTGTCTGTCATTTGCTTGAAGGATAAAATTTTTTCAGGGCATTCAGATGGAACTATCAAGGTCTGGACAGTAAAGGGTAGCTTATTCCATCTGATACAAGAGACTCAAGAACATATGAAGGCTGTCACAAGCTTGGCAATTTCAGAATCTGGTGACAGGCTATATAGTGGTTCACTAGATCGAACAACAAAGGTCTGGTCTATAGGCAAGACATCAATACATTGTGTACAGGTGCATGATATGAAAGACCAAATTCATAATTTAGCTGTAACCAATAGCATATCCTGCCTCATTCCTCAGGGAACTGGTGTCAAGGTTCAATCATGGAATGGAGAAGCGAGGTTATTAAACTCAAACAAACATGTGAAGTGCTTGGCTCTTGTTCATGGGAGACTATACTGCGGATGCCACGACAACAGCATTCAGGAAATAGATTTGGAAACAGGAACAGTCAATACCATTCAAAGTGGTTCTAAAAAATTACTTGTTAAAGCAAATCCTATTTATGCACTGCAAATTCATGGGGAGCTTATATATGCAGCCAGCTCTTCCTTGGATGGAGCTGCTATAAAGATATGGAACACTTCCAATCACAGTATGGTTGGATCAATGGTAACCGCATCAGAAGTGCGGGCGATGGCAATGAGCTCAGAATTAATTTATTTGGGGTGCAAGGGAGGAGCTGTGGAAATTTGGGATAGGAAGAAGCAGAATAGGATTGATACATTACACATGAGTACAAACGGTAAGATTGTTTGCATGGCTCTCGATGGCAATGAAGAAATTTTGGTGATTGGAACTTCTGATGGCCGAATTCAGGCATGGGGAATAAAGGTTCAGCTTATATATAGCACCCAAGTCTGCGTCTTTCACATGTTCCTCTTTTTAGCTGTCTAA 4038 0.4289 MTIATSTRILRHTTDFISDVLSQSELRRRLIATIIRETSISNQITLKHLNLAANTLENAISVSSPTIRSSSLNLAEKLLLPLPETPISSFLLCLIYSLCNRQIEAALSLLRIFDLNPPLARSEIAPILYEKLFSLHLLPVFRRFDEQRAKILPSTSAKLASDTSDYSISDESVVLPSSKLLSRMSEDQASKLRELERNYEEALDDNCRVVAEYFKEVLVNSNGNPSINPPLLILKSSREDENMENIQQEKMETKLPLLMNGRYNPIWAKMETSFEHSSSSLSSNSLHAPFYPQRVSPKILKHQKPSENLSMPSSSNSGAEFESSSNENLPCFSSESEAETIEIFIHHCFVSAAFSQTWILSVPSSPDYPMADYDNQPHGSGKFTPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEHNPNSIPSPSESPYAGTEVAVKSIVPSTSPNSVISQATVDGMIGELRQAINNLYMSEILEESEMAVLQIEQLWKEVNLGVDIQSMLSKPPIINGFMEILFNSVDPQVLQATVFLLAEMGSKENAVIQTLTRVDSDVECIMALFKKGLTEAVVLIYLLKPSSTSLAEMAISASLIAVFNKKEEDLLKMCINPKTAAVLLLAQILGSSDERIASSVAKNLITEKVIGSIVGSLGAEWAEERIAAVEILLRCTQEDGTCRYTIAEKAELSPILESFIGATDAERFNIVQFFSELVKLNRRTFNEQILQVIKEEGAFSTMHTLLIYLQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNTDFPAAQVAAAETIVSLQGRFNFIGKPLTREVLLIRAGLDRSYKNLVQMEQISNFCGEFETTPEEEKAADDWEKKIASVLVGHEFGLLFEALADGLKSRSAELCSACFISATWLTYMLNILPDTGIQGAARVCLLKPFISIFKSARGTEDKILSMLALNSFLHYPDGLRDLTSYTKDVSKGLRELKRSSPLASQMLKVLVEENESKADIWMHNELIQVDCSENGEVLSVICLKDKIFSGHSDGTIKVWTVKGSLFHLIQETQEHMKAVTSLAISESGDRLYSGSLDRTTKVWSIGKTSIHCVQVHDMKDQIHNLAVTNSISCLIPQGTGVKVQSWNGEARLLNSNKHVKCLALVHGRLYCGCHDNSIQEIDLETGTVNTIQSGSKKLLVKANPIYALQIHGELIYAASSSLDGAAIKIWNTSNHSMVGSMVTASEVRAMAMSSELIYLGCKGGAVEIWDRKKQNRIDTLHMSTNGKIVCMALDGNEEILVIGTSDGRIQAWGIKVQLIYSTQVCVFHMFLFLAV 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1641 1345 SMART WD40_4 1075 1114 IPR001680 GO:0005515
Glsi12g1641 1345 SMART WD40_4 1033 1070 IPR001680 GO:0005515
Glsi12g1641 1345 SMART WD40_4 1149 1192 IPR001680 GO:0005515
Glsi12g1641 1345 SMART WD40_4 1244 1280 IPR001680 GO:0005515
Glsi12g1641 1345 SMART WD40_4 1205 1241 IPR001680 GO:0005515
Glsi12g1641 1345 SMART WD40_4 1283 1323 IPR001680 GO:0005515
Glsi12g1641 1345 SMART Ubox_2 388 452 IPR003613 GO:0004842|GO:0016567
Glsi12g1641 1345 Gene3D - 981 1139 IPR015943 GO:0005515
Glsi12g1641 1345 Gene3D - 506 843 IPR011989 -
Glsi12g1641 1345 MobiDBLite consensus disorder prediction 306 329 - -
Glsi12g1641 1345 SUPERFAMILY WD40 repeat-like 1055 1325 IPR036322 GO:0005515
Glsi12g1641 1345 Gene3D - 1150 1339 IPR015943 GO:0005515
Glsi12g1641 1345 Pfam U-box domain 386 456 IPR003613 GO:0004842|GO:0016567
Glsi12g1641 1345 SUPERFAMILY RING/U-box 378 461 - -
Glsi12g1641 1345 ProSiteProfiles U-box domain profile. 384 459 IPR003613 GO:0004842|GO:0016567
Glsi12g1641 1345 CDD RING-Ubox_PUB 386 438 IPR045210 -
Glsi12g1641 1345 Pfam WD domain, G-beta repeat 1081 1114 IPR001680 GO:0005515
Glsi12g1641 1345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 462 IPR013083 -
Glsi12g1641 1345 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 1324 - -
Glsi12g1641 1345 SUPERFAMILY ARM repeat 42 842 IPR016024 -
Glsi12g1641 1345 ProSiteProfiles Trp-Asp (WD) repeats profile. 1082 1115 IPR001680 GO:0005515
Glsi12g1641 1345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1082 1115 - -
Glsi12g1641 1345 MobiDBLite consensus disorder prediction 304 329 - -
Glsi12g1641 1345 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1641 Glsi-ChrGlsi12 33044627 33054190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1641 375 456 U-box Gene Family AT1G23030 50.602 1.91e-18 89.4