Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1638 ATGGACCCTCCACCGAAGAGCTGGAGCATCCATACCCGAGCTGAGATAATCGCCAAGTACCAAGTCATGGACCGGGTCGGCTCCGGAGCTTACTCCGACGTCTACAGGGGTCGTCGTCTCTCCGATAACCTCATCGTCGCCCTCAAAGAAGTTCACGACTACCAATCTGCCTTCCGAGAAATCGAGGCCTTGCAGATCCTTCAGGGCTCCCCCAACGTCGTCGTCTTGCACGAGTACTTCTGGCGCGAGGACGAGGACGCCGTGCTCGTTCTCGAGTTTTTGAGGACCGACTTGGCGACGGTGATCAGAGAGTCCAAGAAGGAAGCCGGGGGTCTCAGTGTTGGGGAGATTAAGAGGTGGATGATCCAGATTCTTTGTGGGGTCGATGCGTGCCACAGAAATATGATCGTGCATCGGGATTTGAAGCCCAGTAATTTGTTGATTTCGGATGATGGAACGCTCAAGTTGGCTGATTTTGGACAGGCGAGGATACTTATGGAGCCTGGATTTGATGCTGCTGATGAGAACCCACAGCCTTATGAACATGATACTTCGAATCATGAAAGTTCCCTTCGACATCCTGCTGTTTTTCCTCAGACAGACAGCGTAAACCAAGAAGGGTACGGAAATGAAGAACAGGGAACTGTGAGTCAAGAAGAATATTTCAGAGTTTTAGATGAGCTGAAAACCAAGAGCTCCACAGATGACATTGATAAGGATACAAACATCCAAGATGGAAATACATCTTGTCTTGCAACATGCACCACAAGTGACATTGAAGATGATCTTTTGAAGAGTTCATTTACGTATGACGCAGAGGAGGGGGAAGGCGATGAACATGGTAGTCTCACATCATGCGTTGGAACACGGTGGTTTAGGGCTCCTGAACTACTTTATGGATCCACTGATTATGGGCTAGAGATTGATCTCTGGTCATTGGGTTGTATCTTTGCAGAGCTCTTAACTTTGCAGCCGATATTTCCTGGGACAGCTGATATCGATCAACTCAGCAGAATTATTAATGTTTTGGGCAACCTCAATGAGGAAGCTTGGCCTGGTTGTTCTAAACTTCCGGATTATAGAACAATCTCGTTCAGTAAGGTGGAAAATCCTAGTGGGCTTGAAGCCTGCCTGCCCAACCGATCCCGGGATGAAGTCTCACTAGTAAAAAAACTCGTTTGCTATGATCCAGCTAGGAGAGCTACAGCAATGGAGCTACTCCATGACAAGTACTTCAAAGAAGAACCTCTTCCTGTACCTATTTCTGAACTGCGGGTTCCTCTGACCAGCAATGGACAAGACGAAGATTCCCCTGGTGGGTGGAATGATTACAATGAGATGGGGTCTGATTCTGATTTAGAGGACTTTGGCCCAGTGAATGTCACCCAAACTGGTACTGGTTTCTCCATACAGTTCCCCTGA 1422 0.4803 MDPPPKSWSIHTRAEIIAKYQVMDRVGSGAYSDVYRGRRLSDNLIVALKEVHDYQSAFREIEALQILQGSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIRESKKEAGGLSVGEIKRWMIQILCGVDACHRNMIVHRDLKPSNLLISDDGTLKLADFGQARILMEPGFDAADENPQPYEHDTSNHESSLRHPAVFPQTDSVNQEGYGNEEQGTVSQEEYFRVLDELKTKSSTDDIDKDTNIQDGNTSCLATCTTSDIEDDLLKSSFTYDAEEGEGDEHGSLTSCVGTRWFRAPELLYGSTDYGLEIDLWSLGCIFAELLTLQPIFPGTADIDQLSRIINVLGNLNEEAWPGCSKLPDYRTISFSKVENPSGLEACLPNRSRDEVSLVKKLVCYDPARRATAMELLHDKYFKEEPLPVPISELRVPLTSNGQDEDSPGGWNDYNEMGSDSDLEDFGPVNVTQTGTGFSIQFP 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1638 473 SUPERFAMILY Protein kinase-like (PK-like) 6 426 IPR011009 -
Glsi12g1638 473 SMART serkin_6 20 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1638 473 FunFam Cyclin-dependent kinase F-1 11 105 - -
Glsi12g1638 473 Pfam Protein kinase domain 20 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1638 473 Pfam Protein kinase domain 280 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1638 473 Gene3D Transferase(Phosphotransferase) domain 1 10 208 - -
Glsi12g1638 473 ProSiteProfiles Protein kinase domain profile. 20 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1638 473 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Glsi12g1638 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Glsi12g1638 473 PANTHER CELL DIVISION PROTEIN KINASE 19 418 - -
Glsi12g1638 473 Gene3D Transferase(Phosphotransferase) domain 1 243 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1638 Glsi-ChrGlsi12 33034429 33036398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1638 4 473 Core Cell Cycle Gene Families AT4G28980 67.017 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Glsi12g1638 Pkinase 2e-32 CL0016