Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1628 ATGTATTACACGTGCAAATTACATAGAAAAATTGATGCGTTGGAAGGAAGAGTAGAGATGCCATCGCTCTCTATCCTCCCTCCATTGACATCGTTTCAAAACCCTAACTTGGAACATCCCCAGCTCTTCAAACCCTTCAAAATCCTCAATCTCAATCTGAGCTCAAAGACTCCTTCATCAACTGACTTTCACCGGCACTTCTTCAAAACCACTAATCCTATTGGCCTCAGGATCCAAAGCCGTAAAATCCTCCACCGGAGGAGTAATGCGTTAAAGGATTCCGAGGAAGAAATTAAGGCGCCCTTGGACTCGAATGGCGGTGATGATGGTAGAGGAGCTGGTGGCAGTGGCGACGGCGAAGGTCGAGGTGAGACGCGGGTAGTGAAAAAAGATGGGTCTTCGGGCCCTTTGCCAGATTGGTTGAATTTCAATTCTGATGACGCAAAGACTGTCTTTGCGGCTCTGGCAATATCGCTTGCGTTTCGGTCGTTCGTGGCCGAGGCGAGGTACATTCCTTCGTTGTCAATGTATCCTACATTTGATGTTGGAGATCGACTTGTTGCGGAAAAGGTTACATACTATTTTAGAGAGCCATGTGTAAATGACATAGTGATATTTAAAAGTCCACCAGTCCTTCAAGAAGTTGGATATACCAATGATGATGTTTTCATAAAACGAGTGGTTGCAAAGGAAGGCGATATTGTTGAGGTTCGCAAAGGCCAGCTTATAGTTAACGGGGTTGAGAGGACTGAAAAGTTCACCCTGGACCCACCATCTTATGAAATGAAACCAACGCGTGTACCAGAGAACTATGTCTTTGTGATGGGAGACAATCGCAATAATAGCTATGATTCTCATGTGTGGGGTCCCCTACCAGCCAGGAACATCATAGGGAGATCAGTTTTTCGCTATTGGCCACCAAATAGGATTGGTAGCACGGTTTATGAGAAAGCTTGTCCTGTTGAAAGTAAGCAGGAGGCTAGTCTAGCATCTCAATAA 999 0.4535 MYYTCKLHRKIDALEGRVEMPSLSILPPLTSFQNPNLEHPQLFKPFKILNLNLSSKTPSSTDFHRHFFKTTNPIGLRIQSRKILHRRSNALKDSEEEIKAPLDSNGGDDGRGAGGSGDGEGRGETRVVKKDGSSGPLPDWLNFNSDDAKTVFAALAISLAFRSFVAEARYIPSLSMYPTFDVGDRLVAEKVTYYFREPCVNDIVIFKSPPVLQEVGYTNDDVFIKRVVAKEGDIVEVRKGQLIVNGVERTEKFTLDPPSYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPARNIIGRSVFRYWPPNRIGSTVYEKACPVESKQEASLASQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1628 332 Gene3D Umud Fragment, subunit A 161 318 - -
Glsi12g1628 332 PRINTS Bacterial leader peptidase 1 (S26A) family signature 164 180 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi12g1628 332 PRINTS Bacterial leader peptidase 1 (S26A) family signature 223 235 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi12g1628 332 PRINTS Bacterial leader peptidase 1 (S26A) family signature 267 286 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi12g1628 332 PANTHER SIGNAL PEPTIDASE I 136 311 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi12g1628 332 SUPERFAMILY LexA/Signal peptidase 162 313 IPR036286 -
Glsi12g1628 332 MobiDBLite consensus disorder prediction 89 134 - -
Glsi12g1628 332 NCBIfam signal peptidase I 149 307 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi12g1628 332 FunFam Peptidase/ serine-type peptidase 173 304 - -
Glsi12g1628 332 CDD S26_SPase_I 167 299 IPR019533 GO:0004252|GO:0006465
Glsi12g1628 332 ProSitePatterns Signal peptidases I signature 3. 272 285 IPR019758 GO:0004252|GO:0016020
Glsi12g1628 332 ProSitePatterns Signal peptidases I serine active site. 173 180 IPR019756 GO:0004252|GO:0016020
Glsi12g1628 332 MobiDBLite consensus disorder prediction 89 104 - -
Glsi12g1628 332 Pfam Signal peptidase, peptidase S26 148 305 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1628 Glsi-ChrGlsi12 32975264 32979305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1628 176 306 MADS-box Gene Family AT1G29960 32.331 4.20e-11 58.2