Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1623 ATGTCAAACTCTACCTCTCCTCCGCCGCAGACCCCTTCTGCTTCCCCACCAACCACTCCCTCTGCACCCCAACCAGCAACTCCTTCGCCTCCGGCACCAAATGAGCCAACTCCAAGCGCTCCTTCTCCCTCACCACCTTCAACGTCCACGCCATCAACTTCCCCACAACCAACCACTTCTTCGCCTCCGGCACCAACTGAGCCAACTCCCAGCGCTCCTACTCGCTCACCACCTTCGCCGTCCACGCCATCAACTTCCCCGCCACCGCCTCCGTCTAGTACCAACACTCCACCGAATCCAGTGACTCGGAGCTCGCCATATCCTCCGTCTAGCTCACTCTCGCCCTCAACTCCGAATCGAAGCCCGCCGCCACCTTCGTCAAAATCACCGGCTATATCAACTGGTGTTGTTGTGGGAATCGCCGTTGGTGCTGTGGCAATTCTTCTAGTGTTGAGCGTATTGTGCATATGTTGTAGGAGGAGGAGGAGAAGACGTGATGAGGGACACTACGTGCCGTCACGGGGACCTAAAGATGACCAATATGGTGGCCCACCACGTCATTGGCAACATAATGCTCCTCCTCCTGCAGATCGTCTTGTCTCGGTGATGCCAAGCCCAACACCCCCGCCACCGGTTGCATCACGACCCCCCCAATCACCATCTTATGTTCCTCAACCTCCACCACTACGACCTTTCATGAGCAGCAGTGGTGGGTCTGGTTCCAACCATTCAGGTGGTGAAAATCCACTCCCACCTCCTCCTCCAGGTATTGCATTGGGATTCTCAAAGAGCACATTTACGTACGAGGAGTTGGCACGGGCAACGGATGGATTCTCTGATGCAAAGCTCCTTGGACAAGGTGGATTTGGATATGTGCACAAAGGAATCCTTCCAAATGGGAAGGAAGTGGCTGTCAAGCAGCTAAAGGCTGGAAGCGGGCAGGGGGAGCGTGAATTTCAAGCAGAAGTTGAAATCATTAGCCGAGTTCATCACAAGCATCTCGTTTCTTTGGTTGGATACTGCAGCACTGGAAACCAGATGTTGCTTGTTTATGAATTTGTTCCTAACAATACGATGGAGTTCCACTTACATGGAAAGGGGCGCCCTACTATGGATTGGCTCACGAGACTGAAAATTGCGTTAGGATCTGCAAAAGGACTGTCGTATCTCCATGAGGATTGTCATCCTAAGATCATCCATCGTGATATCAAAGCTGCTAATATACTTCTGGATTTCAAGTTTGAAGCAAAGGTTGCAGATTTTGGACTTGCAAAGTTTTCTTCTGATGTCAATACTCATGTCTCGACTCGAGTGATGGGGACTTTTGGGTATCTGGCTCCTGAATATGCTTCAAGTGGGAAACTCACAGACAAATCAGATGTTTTCTCCTTTGGGGTCATGCTCCTGGAGCTAATTACTGGGCGTCGACCAGTTGACTCAAGTCATACTTTCATGGAGGATAGTTTGGTAGAGTGGGCAAGGCCTTTGCTAACACGTGCTTTGGAAGATCAAATTTTTGATTCTCTGGTTGATCCAAGGCTCCAAGACGAATATGACCCCAATGAGATGGCTCGCATGGTTGCATGTGCTGCAGCTTGCACACGTCATTCAGCACGGCATAGGCCAAAAATGAGCCAGGTTGTTCGTGCTCTGGAAGGAGATGTGTCTCTAGCAGATCTTAACGATGGAATTAGACCTGGACACAGCACTGTCTACAGTCATCGTGGAAGCTCAGATTATGACACGGCACAGTACAAGGAAGACATGAAAAAGTTCAGGAAAATGGCATTGGGAACCCAGGAGTATGGTGCCAGCAGTGAATACAGTGCCCCTACGAGTGAGAACAGTTTATATCCATCTGGCTCAAGCAGTGAAGGCCAGAGCCGCCAGACCGCCCGGGAAATGGAAATGAGAAAGATGAATAACAGCCAAGGTTACAGTGGAAGCTCTTGA 1953 0.5054 MSNSTSPPPQTPSASPPTTPSAPQPATPSPPAPNEPTPSAPSPSPPSTSTPSTSPQPTTSSPPAPTEPTPSAPTRSPPSPSTPSTSPPPPPSSTNTPPNPVTRSSPYPPSSSLSPSTPNRSPPPPSSKSPAISTGVVVGIAVGAVAILLVLSVLCICCRRRRRRRDEGHYVPSRGPKDDQYGGPPRHWQHNAPPPADRLVSVMPSPTPPPPVASRPPQSPSYVPQPPPLRPFMSSSGGSGSNHSGGENPLPPPPPGIALGFSKSTFTYEELARATDGFSDAKLLGQGGFGYVHKGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCSTGNQMLLVYEFVPNNTMEFHLHGKGRPTMDWLTRLKIALGSAKGLSYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPVDSSHTFMEDSLVEWARPLLTRALEDQIFDSLVDPRLQDEYDPNEMARMVACAAACTRHSARHRPKMSQVVRALEGDVSLADLNDGIRPGHSTVYSHRGSSDYDTAQYKEDMKKFRKMALGTQEYGASSEYSAPTSENSLYPSGSSSEGQSRQTAREMEMRKMNNSQGYSGSS 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1623 650 MobiDBLite consensus disorder prediction 199 231 - -
Glsi12g1623 650 Gene3D Phosphorylase Kinase; domain 1 260 353 - -
Glsi12g1623 650 MobiDBLite consensus disorder prediction 232 246 - -
Glsi12g1623 650 ProSiteProfiles Protein kinase domain profile. 278 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1623 650 MobiDBLite consensus disorder prediction 165 259 - -
Glsi12g1623 650 MobiDBLite consensus disorder prediction 1 131 - -
Glsi12g1623 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 398 410 IPR008271 GO:0004672|GO:0006468
Glsi12g1623 650 FunFam proline-rich receptor-like protein kinase PERK1 256 353 - -
Glsi12g1623 650 ProSitePatterns Protein kinases ATP-binding region signature. 284 306 IPR017441 GO:0005524
Glsi12g1623 650 MobiDBLite consensus disorder prediction 603 630 - -
Glsi12g1623 650 MobiDBLite consensus disorder prediction 603 650 - -
Glsi12g1623 650 FunFam Proline-rich receptor-like protein kinase PERK1 354 562 - -
Glsi12g1623 650 MobiDBLite consensus disorder prediction 9 129 - -
Glsi12g1623 650 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 143 613 IPR047117 -
Glsi12g1623 650 SMART serkin_6 278 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1623 650 SUPERFAMILY Protein kinase-like (PK-like) 254 551 IPR011009 -
Glsi12g1623 650 MobiDBLite consensus disorder prediction 168 184 - -
Glsi12g1623 650 Gene3D Transferase(Phosphotransferase) domain 1 354 561 - -
Glsi12g1623 650 CDD STKc_IRAK 284 553 - -
Glsi12g1623 650 Pfam Protein tyrosine and serine/threonine kinase 282 551 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1623 Glsi-ChrGlsi12 32947340 32951388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1623 92 633 Trihelix Transcription Factor Family AT1G70460 48.708 1.10e-166 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Glsi12g1623 PK_Tyr_Ser-Thr 1.4e-46 CL0016