Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1614 ATGGAGCAGAACAACGTCATCGCACCCTTCGTTATAAAGACTTATCAGATGGTCAACGATCCCACTACTGATACTATCATCACTTGGGGCCGAGCCAATAACAGCTTCATCGTCGTCGACCCTTTGGATTTCTCCCAGTGGATCTTACCCGCGTATTTCAAGCACAACAACTTCTCTAGCTTCGTTCGTCAGCTCAATACCTATGGGTTCAGAAAGGTGGATCCAGATCGGTGGGAGTTTGCGAACGAGTGGTTCCTTCGTGGGCAGAAGCACTTGTTGGTTAATATCGTTAGAAAGAAGCACAGTAAGATTTCTACGTATTTTCAGGGGAAGCAGGAGGACTTGGACGACGAAGTGATAGTGATGGAGATAGCGAGGTTGAAGGAGGAGCAGATGGCCTTGGAGAAGGAGCTCGAAGGGATGAATAAGAGGCTGGAGGCTACGGAGAGACGGCCTCAGCAGATGATGGCTTTTCTGAACAAAGTTGTGGATGACCCAGATGTTCTTTCCCGTATATTGCTCGAGAGAGAACGAAGGCAGCTAGGGGAGAAGAAGCGCCGGTTGATATCGGCCGCGACCTCTTCGTGTTCTTCGTCTGGCATGGCGGTCAAAACAGAGGCGGAGGAAGAGGAAGCAACTGTGGGAGGTATTATATCTTCGTCGCCAGAGTCTGGTTTCGAATTTGATAATTTCTGCCTGTCATCGTCACCACAGGAAACGATCACCGGCCATTGGGGTGGCCGAAGGCAAGCTATAATGGATATGCCTCGGGACATTGATGAAGAGGTTACCAATGGCGCCGCTGCTCCGATACCGTTGACGGCGAGAATAGATAACCAGAAGGCTCTGTGGCCGCCTTTGGGAGGTTCCTATTCGGGCTGCGAAAATAGTGAAGGCCAGATGACGTATTTTACAGAAATGGCGGCGGAAAGGAGTCCTCCGCCGCCGCCTTATCCATTTTCGCTGTTGGAGGGTGGCTTTTAG 984 0.5071 MEQNNVIAPFVIKTYQMVNDPTTDTIITWGRANNSFIVVDPLDFSQWILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLVNIVRKKHSKISTYFQGKQEDLDDEVIVMEIARLKEEQMALEKELEGMNKRLEATERRPQQMMAFLNKVVDDPDVLSRILLERERRQLGEKKRRLISAATSSCSSSGMAVKTEAEEEEATVGGIISSSPESGFEFDNFCLSSSPQETITGHWGGRRQAIMDMPRDIDEEVTNGAAAPIPLTARIDNQKALWPPLGGSYSGCENSEGQMTYFTEMAAERSPPPPPYPFSLLEGGF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1614 327 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g1614 327 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g1614 327 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g1614 327 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g1614 327 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Glsi12g1614 327 Gene3D - 2 100 IPR036388 -
Glsi12g1614 327 Coils Coil 124 151 - -
Glsi12g1614 327 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g1614 327 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 213 IPR027725 -
Glsi12g1614 327 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g1614 327 FunFam Heat stress transcription factor B-4 2 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1614 Glsi-ChrGlsi12 32886275 32887375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1614 6 193 HSF AT3G24520 69.792 3.63e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi12g1614 HSF_DNA-bind 3.9e-30 CL0123