Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1594 ATGGAGGCATGGAACTTATTCGACACGCCCGATTCCGTTCCTTATCTTCTCAAAACAACGAATAATGATAGCGATACTCCGACTAACCGACAGAAAACAATCTATATTATTATTATTATTAACACAGCGCATAGACCGTCCTTGCAAATTCAACAACTAGACCAACACCATCAAATTAGCCACGCCATTCTCAAAGGGACACTGCACGCCAGCCCGATAACACCGGTTTGGCACAGCTCTCTCAGCTGTACTAGCCATAATTACCAATTCAGAAAGATCTGTCAAAATTCAGTAGTGGAGATGGCAAACCGACTAAAGGAAGATGAGAAGAATGAACGAATAATTCGGGGTCTTCAGAAACTTCAAGCGAATCGCAAATGTATTAATTGCAGCAGCCTGGGACCACAATATGTGTGCACAAATTTTTGGACATTTGTTTGCACAAACTGTGGTGGAATACACCGAGAATTTACACATCGAGTTAAATCAATTTCAATGGCTAAATTTACTTCACAAGAAGTTAGTGCACTTCAGGAAGGAGGAAATCAGCATGCAAAAGAAATTTATTTTAAAGAATGGGATCCACAACGTCATTCTCTTCCTGATAGCAGTAATGTTGACAGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCACTGGTGAGAGGACCTATGACAAACCACCGAGAGTAAAGATGGGTGACAAGGATGATTTTTATGAAAACAAGAGAGTTGAGACATATCAGGGAGGATCTAAAAGCCCACCATATGAGGACACATATGAACGCCGTTACAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCTGGCTATGATCAAGAAAGTAGGCAATATAGTGAGCATAGGAGAAGCCCTGGTCGTCCTCCAATAATCAATGATTGGCGTCGTGAAGATAGATTTGGAGATGGAAGGAGATTGGAAGACCGTAGAATATTTGATGGAGATAATAAGCCAGAAGGGCAATCACCCGAGCGAGGAAAAGATCTGGATTCTTCAAGTCCCCCTGTTGTACGGCCTGTCAGAGATATTTTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCCCCAAAAACGAACAGTTCAAGGGCTGCTGATGGATCTGCACTCACACAGAGAACTGTGTCTTCCAGTAGCCTGGCATCCAGCAATGGAAACACGGCTGAAGTTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGAGCCCGACCCTCCTGTGGCTCCAGCAATTCCTCAAGCCCAACAAACTACTGTGGCTCAATCTGTTGTACAGCCAGCAAATTCTGGTGACGACAACTGGGCCTCTTTTGATGTTGCCCCTGGGGCAAAAGCAACTCAAGGTCCTTCAAATTTAAATCCACTTGAATCTGTGCTGTCACAATTGTCAGTACCATCACCTGTGCCTGCTCATGTTTCTGGATTCCAAGGGCCTGTGCCAGCATCAGCTCTGAATGCAACTGCTGCTGGAGCTGGAAATGTTGGCAACTTCTCAACACTCCCACTGAGTGGTGCTCCTGTAGCAGGATTGACAACAGTGTCACCTCTCAATGATGCGGGCCAGTGGGCCAGTATGCAGCATCAGCAACTTTTGTTCCCTACCACTGTTAGTCAGTCTACTACTCAACAATTTATCCCATCAGTAGGTGGATCTTTGAATAATCAGCAGTGGAGTATATCTCCTGTGCCCACAATACAAAGACATCTGAGTGCACCAATGCCACCTGCGTCCCATCTTGTCTCAAAAGCTGTCAATGAGGTCAACACCAGTGTTGTTTCTCAACCTTCTATAGTAGAAGTACAACCAAATGAAAGAAAAGAACTTCCTGAGAATCTTTTTACTGTAAAGTATTCATCCTTCCCTGCTCAGGCTCCAGGATGGCAAATGGGTCCTCCCCGTGGCATGGGTATCTTTATGCCATATAATACTGCAGCGCCCATGCCAAGTTTTCCACTGTCATCAAAATCAACAAATCCGTTTGATGTCAGCAGTGAACCACCTCCAGTTCAAGCCCCAACATTTCCTTCCATGACATCCTTGCAAGGTGCTCTGCCTAGTATACCACCTTCTTCTGGTGTAATGCACCCTTCAAGCCTGGGTAATCCATCACTTGCCTGGAATTCACCCCAGTCATCATATGGATCAGTACTGCCCCCGCAAGCACAAGGTCATGCATCAGTAATGGCACCAGGGGCATACATCGGCCAACAGATGCCAACTAGCATGCCAATGCCAAGGCATCAAGAAATTGGGAATTCTGGTACCGGGGGAGCTACTTTTGGCTTCTCAAATCCAGATCAGCAGCTGACTGGTATGTTCTCAACCCCTGCTACCCTAAATTCCTTCTCTGCTGGAGGGAACCCATTTGGATGA 2409 0.4525 MEAWNLFDTPDSVPYLLKTTNNDSDTPTNRQKTIYIIIIINTAHRPSLQIQQLDQHHQISHAILKGTLHASPITPVWHSSLSCTSHNYQFRKICQNSVVEMANRLKEDEKNERIIRGLQKLQANRKCINCSSLGPQYVCTNFWTFVCTNCGGIHREFTHRVKSISMAKFTSQEVSALQEGGNQHAKEIYFKEWDPQRHSLPDSSNVDRLRDFIKHVYVDRRFTGERTYDKPPRVKMGDKDDFYENKRVETYQGGSKSPPYEDTYERRYSDRSSPGGRSPGYDQESRQYSEHRRSPGRPPIINDWRREDRFGDGRRLEDRRIFDGDNKPEGQSPERGKDLDSSSPPVVRPVRDILGENVVPLRISEPPKTNSSRAADGSALTQRTVSSSSLASSNGNTAEVKLETTKSLIDFDAEPDPPVAPAIPQAQQTTVAQSVVQPANSGDDNWASFDVAPGAKATQGPSNLNPLESVLSQLSVPSPVPAHVSGFQGPVPASALNATAAGAGNVGNFSTLPLSGAPVAGLTTVSPLNDAGQWASMQHQQLLFPTTVSQSTTQQFIPSVGGSLNNQQWSISPVPTIQRHLSAPMPPASHLVSKAVNEVNTSVVSQPSIVEVQPNERKELPENLFTVKYSSFPAQAPGWQMGPPRGMGIFMPYNTAAPMPSFPLSSKSTNPFDVSSEPPPVQAPTFPSMTSLQGALPSIPPSSGVMHPSSLGNPSLAWNSPQSSYGSVLPPQAQGHASVMAPGAYIGQQMPTSMPMPRHQEIGNSGTGGATFGFSNPDQQLTGMFSTPATLNSFSAGGNPFG 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1594 802 SMART arf_gap_3 112 230 IPR001164 GO:0005096
Glsi12g1594 802 MobiDBLite consensus disorder prediction 423 444 - -
Glsi12g1594 802 MobiDBLite consensus disorder prediction 284 336 - -
Glsi12g1594 802 ProSiteProfiles ARF GTPase-activating proteins domain profile. 112 230 IPR001164 GO:0005096
Glsi12g1594 802 MobiDBLite consensus disorder prediction 227 399 - -
Glsi12g1594 802 MobiDBLite consensus disorder prediction 411 466 - -
Glsi12g1594 802 PRINTS HIV Rev interacting protein signature 161 182 IPR001164 GO:0005096
Glsi12g1594 802 PRINTS HIV Rev interacting protein signature 124 143 IPR001164 GO:0005096
Glsi12g1594 802 PRINTS HIV Rev interacting protein signature 143 160 IPR001164 GO:0005096
Glsi12g1594 802 PANTHER ARFGAP/RECO-RELATED 101 802 IPR044820 GO:0005096
Glsi12g1594 802 Gene3D Arf GTPase activating protein 101 231 IPR038508 -
Glsi12g1594 802 MobiDBLite consensus disorder prediction 227 247 - -
Glsi12g1594 802 Pfam Putative GTPase activating protein for Arf 113 224 IPR001164 GO:0005096
Glsi12g1594 802 CDD ArfGap_AGFG 112 222 - -
Glsi12g1594 802 MobiDBLite consensus disorder prediction 364 399 - -
Glsi12g1594 802 SUPERFAMILY ArfGap/RecO-like zinc finger 111 223 IPR037278 -
Glsi12g1594 802 FunFam Arf-GAP domain and FG repeat-containing protein 1 101 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1594 Glsi-ChrGlsi12 32765649 32773724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1594 112 222 C2H2 Transcription Factor Family AT4G21160 32.479 6.68e-11 62.8