Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1589 ATGGCAACTGTGACAGTTTCCCCTCCTCCCTTCGAACCAACTAACAAGGAAGAAGTTTCTGTTTGGATTCATGCTCTTTCGGAGCAAATTTCTCAGCTTTGCTCCGCCAAAACCCTTGATTCGTCATCATTCGCTTCAGACAAGGGTCATTCAGTTATAGTGTTTACCACTTATAGATGGATTTGGAAGAGAAGTTCCTTGCCAAAGTGTCTTACCATTCATATACTTGCTGCTAGTCATTTCAAAAATCTTGGACTTGTTGAATTTGGTTATTATTCATATTTATCAGATAAACTAGAAGGGGATGCCAATGCACCTTATGTGGGGATAAAATCGTACTGTTTTCCCCTTCCTGATCTTTCAGTCATTAAAGAGGCAACTCGCTTGCTAAATATAAGATCTAGAGCTAGTGGTGTAGTATACATGGTGCTTGATGCATACGTGATGCCTAGGTACACAAAGAACCTGGTCTGGTTAGCTCCACTTGTTGGATTCTCGTTACCTAAATCTGAGGTCTATGTATGTGGTTATAATCTGAAGCTTACACAAACCCCAAAGAAGGGGCTTAATGGTGTCTTAACTCCTAACAATATGCTTATAACATTGTTTTTGCCACCAGAGACTTACTTTGCAGTTGGTTATTGCCATCCAGTTTCTGGTCTTCAAAGCCTTTCTTCGAGTGTGCAAAGCACACCAGAGAAAAATGGCCATTCTGACGATGCTTCAAGAAGTCCGGAACTTCTTCAGGAGTTCCTGAAATCTGGTACAAAGAAGGAACTTCTCCGAACATGCTTTGATAAGGACAAAAAGAACATTTCGTCAAAAAATAAGATGACTGAAACTAAGTCAACCGGTAAGATTATCAAGAAACAGGAATCAAAAAAAGTTTCCAGCTTTAGCAACCAGCCCACTAAGAAGCAACACAGAAAGGGAGAAAATCCCACAAGGCTCATGCCAGCTCCTGACCAGTCTTCTGATTTTGGACATACGAACTCCTGGATCTGTAAAAATTCTGCTTGTAGAGCTGTTTTATCTATAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATCTGTCACCTTTTTGATGATAACAAAGATCCTAGTCTTTGGTTGGTCTGCACATCTGAATCTGCTAAAGGTGACTCCTGTGGTTTGTCATGCCATATCGAGTGTGCCATTCAACATGAAAAAGTGGGAGTTGTTGATCATGGACAACTGATGCAACTGGATGGTGGTTATTGTTGTGCATCTTGTGGTAAAGTTACAGGGATACTTGGATGTTGGAAGAAGCAGTTAAATATAGCAAAAGATGCTCGACGTGTAGATGTACTCTGTTATAGAATATATTTGAGCTACAGGCTTCTGGATGGGACTTTGAGGTTTAAAGAACTGCATGAGATTGTTCAAGAGGCGAAGGCTAAACTGGAAACAGAAGTCGGTCCAGTTAATGGAGTTTCTTCCAAGATGGCACGAGGTATTGTTAGCAGACTCTCTATTTCCAGTGATGTGCAGAAACTCTGCTCTCTTGCTATTGAGAAAGCTGATGGGTGGCTTGCCTCTGTTTCCAGTGTAAATCCAGATTCCAGAGAGGGTTCACTTCCTGCTGCCTGCAAGTTTGTTTTTGAAGAAGTAACAGCTTCCGCAGTCAAAATAATTTTGATTGAAATGTCAAATGCATCTTCTGAGGACGTCAAAGGTTACAAGCTCTGGTATTACAAGAGTGGGGAGGAATTGCACACTAAAGATCCTGTTTGTATTTTCCCTAAATCTCAGAGGAGGATTCTGATATCAAACCTTCAACCTTGCACAGAATATACTTTTCGGATTATATCTTATACAGATGTGTGTGACCTGGGTCATTCTGAGGTCAAGTGTTTCACCAAGAGTGTTGAGATAATTCAAAACAATCCCTCTTCATTAGTTGCTTTGAATCATAATAAGGAGAGCCTTAAAACTGGAGACGGTTCTTCTGACTCCAAAATGGAGCCAAATCCCACAATGGCTGATTCTGGATTTAAGGTTCGAGACCTGGGAAAAATTTTACGTCTTGCTTGGGCTCAAGAACAAGGTTGTTTTGATGGGTTTTGCTGTGCTGATGTGAAAAATTGCTGTGGAGGAAGTGAAATGGTCAGGCCTGATAATGCAGAAGAGAGTTTGCCCATAGTTTCTCGAGGCCTTGATTTAAATGTTGTTTCAGTGCCTGATTTAAATGAAGAATTAACACCTCCTTTTGAGTCTTCCAGGGATGAAGATAATGGTTGCACTTTGCAGCAAGCTGTGGGGGCAGATGACGATGCTGCTTCTCATGATATGGAGAAAAATGGTTTAGCAAGATCTCATGGTAGTGGTGACTCCCAAACCTGGACCCATGGACCAACCGGAGAAGTGCCAGCTGTTGACTCTCGCCTAGCTGCTTGTAGGAAGAGAGTAGCAAGCACAAATGAAGAGCCGCATGATTGTGACAGCACTTTGATAAATGGCTCTCCTTTACGTATATCTGATGGCTCATGTTCCCTGGATGAGAACTTTGAGTATTGTGTGAAAGTTATTCGTTGGCTAGAATGTGAGGGCCACATTAAACAGGAATTTCGGTTGAAATTGCTAACATGGTTTAGTTTGAGGTCAACAGAGCAAGAACGCAGGGTGGTCAATACCTTTATTCAAACTCTGATAGATGACCCAAGTAGTTTGGCTGGACAACTGGTTGATTCCTTTTCTGATATTATATCTAACAAGAGGCCAAGAAATGGATTCTGTAGTAAGCTTTGGCATTAA 2778 0.4136 MATVTVSPPPFEPTNKEEVSVWIHALSEQISQLCSAKTLDSSSFASDKGHSVIVFTTYRWIWKRSSLPKCLTIHILAASHFKNLGLVEFGYYSYLSDKLEGDANAPYVGIKSYCFPLPDLSVIKEATRLLNIRSRASGVVYMVLDAYVMPRYTKNLVWLAPLVGFSLPKSEVYVCGYNLKLTQTPKKGLNGVLTPNNMLITLFLPPETYFAVGYCHPVSGLQSLSSSVQSTPEKNGHSDDASRSPELLQEFLKSGTKKELLRTCFDKDKKNISSKNKMTETKSTGKIIKKQESKKVSSFSNQPTKKQHRKGENPTRLMPAPDQSSDFGHTNSWICKNSACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESAKGDSCGLSCHIECAIQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTLRFKELHEIVQEAKAKLETEVGPVNGVSSKMARGIVSRLSISSDVQKLCSLAIEKADGWLASVSSVNPDSREGSLPAACKFVFEEVTASAVKIILIEMSNASSEDVKGYKLWYYKSGEELHTKDPVCIFPKSQRRILISNLQPCTEYTFRIISYTDVCDLGHSEVKCFTKSVEIIQNNPSSLVALNHNKESLKTGDGSSDSKMEPNPTMADSGFKVRDLGKILRLAWAQEQGCFDGFCCADVKNCCGGSEMVRPDNAEESLPIVSRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVGADDDAASHDMEKNGLARSHGSGDSQTWTHGPTGEVPAVDSRLAACRKRVASTNEEPHDCDSTLINGSPLRISDGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCSKLWH 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1589 925 MobiDBLite consensus disorder prediction 650 665 - -
Glsi12g1589 925 PANTHER VIN3-LIKE PROTEIN 2-RELATED 223 925 IPR044514 GO:0010048|GO:0040029
Glsi12g1589 925 Pfam PHD - plant homeodomain finger protein 335 453 IPR032881 -
Glsi12g1589 925 MobiDBLite consensus disorder prediction 275 293 - -
Glsi12g1589 925 MobiDBLite consensus disorder prediction 275 325 - -
Glsi12g1589 925 MobiDBLite consensus disorder prediction 765 797 - -
Glsi12g1589 925 CDD FN3 564 615 IPR003961 GO:0005515
Glsi12g1589 925 ProSiteProfiles Fibronectin type-III domain profile. 534 633 IPR003961 GO:0005515
Glsi12g1589 925 Gene3D Immunoglobulins 520 624 IPR013783 -
Glsi12g1589 925 MobiDBLite consensus disorder prediction 650 669 - -
Glsi12g1589 925 CDD PHD_VIN3_plant 355 419 - -
Glsi12g1589 925 SUPERFAMILY Fibronectin type III 543 617 IPR036116 GO:0005515
Glsi12g1589 925 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1589 Glsi-ChrGlsi12 32737160 32747526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1589 331 918 PHD Gene Family AT3G24440 49.073 4.93e-177 524