Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1568 ATGAAAGCAGCAAACGCATTGGGAGCTAAAACAGCGCGAGCATGTGATAGCTGCCTACGCAGAAGGGCACGTTGGTTTTGTGCAGCTGACGATGCTTTCCTATGCCATGGCTGCGACAACTTGGTGCACTCTGCAAATCAATTAGCTAGCAGACACGAAAGGGTTCGGCTTCAAACTGCGTCCTCTAAGGTAAAGTACTGCTCAGTGACCTCTAACAAGGCAACCCCACAAGCGTGGCACAGTGGATTCACTCGCAAGGCCAGAACCCCACGTCATAACAAGCACTTATTGGCGCAGCAACGATCTAAAGATGAAGAAACGCTTCTCAATAGCAGTCCTAGTACTCTTCCCGTCGTGCCGGAGCTGGAAGGCGAAGAAGCAATGGTGGATGAGAGTGATGAGCAGCTGCTTTGCCGGGTGCCGGTGTTGGATCCATTTGAAGCTGATCTTTGCAGTATGTACAGTGAAGTGGGGGATGAGAGATTGGACAGCATCATGAAGAAAGATATTAGCGGTGCTGATGATCTGGACAATTTTTCTGAGTTTCTTTCATCAGATATGGATCTTGCCGAGTTTGCTGCTGATGTTGAAAGCTTACTTGAAAGTGGGTTTGATGAGGATTCCGGGGAAATGAAAGGAGCAGCAGAACTGTTTGATTGTAAAGAAGAAGATGAAAGGGATGCATATGTGGGACTTAAAACTGCTGCGATGGTAAAGATTAAGGATGAACAAGTCGAATCTGCATCAGCAGGAAACGTAGAGACGAAAGGGAAGATATTTTTGAGGCTAAACTACGAAGAGGTGATTAGCGCTTGGGCCAGCCAAGGTTGTCCATGGACATCAGGACACCCACCTCAGTTTAACTCTGATGAGTGCTGGCTAGACTGCTTGGGTTCGAGTGGCGCAGATGTTCGATGCTCTTATGTTAGGAGCTTAAGGGGACAGCTATTAGGGAGTGAAGATGGGGGAAGAGAAGCAAGAGTGTCAAGGTACAGAGAGAAGAGAAGAACACGTTTATTTGCAAAGAAGATAAGGTATGAAGTCAGGAAATTGAACGCCGAGAAGAGACCCAGAATGAAAGGTCGATTTGTGAAGCGGTCATCCTTCCTTGGAACCCCTTCCCGCTGA 1128 0.4761 MKAANALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASSKVKYCSVTSNKATPQAWHSGFTRKARTPRHNKHLLAQQRSKDEETLLNSSPSTLPVVPELEGEEAMVDESDEQLLCRVPVLDPFEADLCSMYSEVGDERLDSIMKKDISGADDLDNFSEFLSSDMDLAEFAADVESLLESGFDEDSGEMKGAAELFDCKEEDERDAYVGLKTAAMVKIKDEQVESASAGNVETKGKIFLRLNYEEVISAWASQGCPWTSGHPPQFNSDECWLDCLGSSGADVRCSYVRSLRGQLLGSEDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRSSFLGTPSR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1568 375 ProSiteProfiles CCT domain profile. 324 366 IPR010402 GO:0005515
Glsi12g1568 375 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 3 368 - -
Glsi12g1568 375 SMART bboxneu5 10 57 IPR000315 GO:0008270
Glsi12g1568 375 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
Glsi12g1568 375 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Glsi12g1568 375 Pfam CCT motif 324 366 IPR010402 GO:0005515
Glsi12g1568 375 CDD Bbox1_BBX-like 14 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1568 Glsi-ChrGlsi12 32544736 32545959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1568 4 366 C2C2-CO-like Transcription Factor Family AT1G25440 42.615 1.34e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Glsi12g1568 zf-B_box 4.2e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g1568 12 32544736 32545959 Glsi12g1568 12 32544736 32545959 ECH