Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1563 ATGCTTCTTGTTGAAGTAGACAGGCTATTAATACCCCTTCTTGTTCATGTTATTAAGAGCTTACTTTTGGGATCATATATTTCTGGTCCCCCTGATCTTCACTTTTTGGTAAGTTCTTCAAGTTCAGGAGCTTTCAAAAGAATGGAGGAAAATTTACCTCCCGGCTTCAGATTCCATCCCACAGATGAAGAGCTCATCACTTATTATCTAACAAGGAAAGTTTCCGATAACGGTTTCACATCCAAAGCTATGGCAGTTGTTGATCTCAACAAGTGTGAACCTTGGGACCTTCCAGGTAAGGCTTCGATGGGAGAGAAGGAATGGTATTTCTTCAGTCTGAGAGACCGGAAGTACCCAACCGGACTTCGAACCAACCGAGCTACGGAATCAGGCTATTGGAAAACCACGGGAAAAGACAAGGAAATATTCCGCGCTGGGGTTCTGGTAGGGATGAAGAAAACCCTAGTCTTTTATAAGGGAAGAGCTCCCAGGGGGGAGAAAAGCAATTGGGTTATGCATGAATACAGACTACAAAACAAGCATCCCTTCACAACTTCCAAGGAAGAGTGGGTGGTTTGCAGGGTGTTCCAAAAAAGCTCATCGGCAGCCAAAAAACCACAGCACACGTCATCCTCCCAACCATCTCTAGAGTCACCTTGTGACACCACCTCTATGGTTAACGAATTCGGTGATGCTGAGCTTCCTGCAAATTTTACCAGTATTCCTAATTCGTCATCAACTGGATTAATCAGCAACATTTTAACACAAAATAATTACAACGTTAGCACAAACATGAACTTGAACATGAATAATTGGCCAGCTCCAACCGAGGTTCCCTCTCTTCCTTCTGTCCCGTGGACTTCTGCTTTGCTCAATCCAAATCTTTCCGTCAACTCCTTGCTTCTTAAAGCATTGCAGCTTAAGAGCTATCATCAACAAAGAGAAGCTGCAGTGGCTAATGATAATTTTGCATCATATAATATGCCTCAAGGAGTTTCCCACCTTGGAACTGATCTAGTTTCAAATCTCAGTGCTTCATCCTCGAAAGTTTTAGAATGTATGCCGCAGCAGCAGCAACAGCAGCAGGAGCAACCATTCAATTTGGACTCCGTTTGGTGA 1119 0.4352 MLLVEVDRLLIPLLVHVIKSLLLGSYISGPPDLHFLVSSSSSGAFKRMEENLPPGFRFHPTDEELITYYLTRKVSDNGFTSKAMAVVDLNKCEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLQNKHPFTTSKEEWVVCRVFQKSSSAAKKPQHTSSSQPSLESPCDTTSMVNEFGDAELPANFTSIPNSSSTGLISNILTQNNYNVSTNMNLNMNNWPAPTEVPSLPSVPWTSALLNPNLSVNSLLLKALQLKSYHQQREAAVANDNFASYNMPQGVSHLGTDLVSNLSASSSKVLECMPQQQQQQQEQPFNLDSVW 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1563 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 48 291 - -
Glsi12g1563 372 Pfam No apical meristem (NAM) protein 53 177 IPR003441 GO:0003677|GO:0006355
Glsi12g1563 372 SUPERFAMILY NAC domain 45 198 IPR036093 GO:0003677|GO:0006355
Glsi12g1563 372 MobiDBLite consensus disorder prediction 351 372 - -
Glsi12g1563 372 MobiDBLite consensus disorder prediction 202 223 - -
Glsi12g1563 372 ProSiteProfiles NAC domain profile. 52 198 IPR003441 GO:0003677|GO:0006355
Glsi12g1563 372 FunFam NAC domain-containing protein 100-like 61 202 - -
Glsi12g1563 372 Gene3D NAC domain 61 203 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1563 Glsi-ChrGlsi12 32508720 32509997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1563 48 372 NAC Transcription Factor Family AT3G18400 60.000 5.98e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi12g1563 NAM 4.7e-41 No_clan