Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1557 ATGGCTGAATTCACAACAGATTTGCAAAGCCTTAGATATTCATTTCCTTTCTTAGATATTGATCCAAATATGGAACTAATGAATCAATTCACTGGGATGAATCCACATGTCCTGAACAATTCAAATCTGAATTTGCAGAGCTTGATTCCTTTCTCTAGTGACAGCTTTTTGAGCCCTCAAGAACCTGAATTTCCAGGAATCTTGGAAGAAAATTTATCTAGTCTTGTCCGTCATGTCAGCCACAATTCAGAGACGGGTTCCCAGCCCATTTTCCCAGCAGAAAATGGAAGTCATGATAGTCTAAAGAGGAAAGCAATGGATGTGCCAGAGACGAGTTCTGCAAACTCAACTCCTGCAGTTTCTGAAAGTGGAAGCAAGACCAAAAGTAGTTGTGGCAGAGGTAAGAGAGTAAAAAGCAATGCAACAGAAAAAGGGAAACCAAAGGAAGTGGTTCATGTCAGAGCCAGAAGGGGTCAAGCTACAGATAGCCACAGTTTAGCAGAAAGGGTTAGAAGAAGGAAAATCAATGAAAAAATAGGATGCTTGCAGAACATTGTCCCAGGATGTTACAAGTTCCTGTCTATGAAGCTCACTGCAGCCAGTACCTTTTACGACTTCAATTCAGAGACAGATGCTTTGGAAACAATGCAGTTAGCATGCATGAATAGGGACCCAAAGAGTCCCAAAAGTGAGCTGATGAAAGGTATATCTCATTATTCCAATATGGATTCAGATTTTGGAACACATGTTAGGAGGCAGCATCCTCACTTTCCACTATTAAGGTCAAGTGATGTTGACTTAGCAGGATTGCTTTTGCACCAAAGATGGTAA 831 0.4091 MAEFTTDLQSLRYSFPFLDIDPNMELMNQFTGMNPHVLNNSNLNLQSLIPFSSDSFLSPQEPEFPGILEENLSSLVRHVSHNSETGSQPIFPAENGSHDSLKRKAMDVPETSSANSTPAVSESGSKTKSSCGRGKRVKSNATEKGKPKEVVHVRARRGQATDSHSLAERVRRRKINEKIGCLQNIVPGCYKFLSMKLTAASTFYDFNSETDALETMQLACMNRDPKSPKSELMKGISHYSNMDSDFGTHVRRQHPHFPLLRSSDVDLAGLLLHQRW 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1557 276 MobiDBLite consensus disorder prediction 137 165 - -
Glsi12g1557 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 213 IPR011598 GO:0046983
Glsi12g1557 276 MobiDBLite consensus disorder prediction 81 165 - -
Glsi12g1557 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 202 IPR036638 GO:0046983
Glsi12g1557 276 Pfam Helix-loop-helix DNA-binding domain 163 202 IPR011598 GO:0046983
Glsi12g1557 276 Gene3D - 151 235 IPR036638 GO:0046983
Glsi12g1557 276 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 87 191 IPR024097 GO:0006355
Glsi12g1557 276 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1557 Glsi-ChrGlsi12 32471682 32474648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1557 50 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 44.231 5.73e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi12g1557 HLH 4.3e-05 No_clan