Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1556 ATGCCAAGCAATGAACCAATAGATGTTTCCAGTGGCAATGACTATGGAAGGTTTTTCTCAGTGAAAGTTTTCATGACGACTTCAAAAAGCGACAGCAGTTGTAGTGAAGATGACAATGAAGTTAGAAGAGGACCTTGGACTCTCGAAGAGGATACTCTGCTTACCCAATACATCTCTACCCATGGGGAAGGGCGATGGAATTTTCTGGCAAAACGTTCAGGGTTAAAGAGAACAGGAAAGAGTTGCAGATTAAGATGGCTAAATTATCTGAAGCCAGATGTAAAACGAGGAAATCTAACCCCGGAAGAGCAGCTTTTGATTCTTGAACTCCACTCAAAGTGGGGCAACAGGTGGTCGAAAATTGCACAACATCTGCCGGGCAGGACAGACAACGAGATCAAGAATTACTGGAGAACTCGAATTCAGAAACAAGCAAGACATTGGAAGATTGACACAGACAGCACAGAATTTCAAGAACTTGTTAGGCGCTTTTGGATGCCAAGGTTGCTTCAGAAAGTAAGAGAAGTACCTTCTCCTGCCATGTCAATCCAAAACCAAACGTTTCCTTTGCCTCTCGACGGTGTTTCTCAATATTCACAAATAGGGACGGCACCAACACAAATTCCTTGGCAGGGACTTTGTATGAATGAAACAGGTCTTAATTATTATTTGGATCCACAGGAGCAGAACTCAGCCTCAGAACACAAACATAGTTTATGCATGTCCTCTTCAGAGTCAACAAATATCCCCAAAATGTCTCAGTTTCATCCCTTAGATAACAACGACATGAGCACCTTTGCGTATGATGGCCACTATGTAAACAACAATGCTCATAACATAGAAACATTCAACATGGACACTACAGTGGCAGCTGTAGATATGGAATACACAGCTGGTTATAGCCAGAAGGCGGAAAGTAATTGGGTCAACAATGATTTTGCATGTAGCATTTGGAACATGGATGAGTTATGGCAATTTAAAAACTTCCAAGAATAA 996 0.4177 MPSNEPIDVSSGNDYGRFFSVKVFMTTSKSDSSCSEDDNEVRRGPWTLEEDTLLTQYISTHGEGRWNFLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPEEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHWKIDTDSTEFQELVRRFWMPRLLQKVREVPSPAMSIQNQTFPLPLDGVSQYSQIGTAPTQIPWQGLCMNETGLNYYLDPQEQNSASEHKHSLCMSSSESTNIPKMSQFHPLDNNDMSTFAYDGHYVNNNAHNIETFNMDTTVAAVDMEYTAGYSQKAESNWVNNDFACSIWNMDELWQFKNFQE 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1556 331 Gene3D - 99 142 - -
Glsi12g1556 331 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
Glsi12g1556 331 Pfam Myb-like DNA-binding domain 96 139 IPR001005 -
Glsi12g1556 331 CDD SANT 100 139 IPR001005 -
Glsi12g1556 331 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 37 244 IPR044676 GO:0003700|GO:0006355|GO:0043565
Glsi12g1556 331 FunFam MYB transcription factor 99 141 - -
Glsi12g1556 331 Gene3D - 43 95 - -
Glsi12g1556 331 SMART sant 42 92 IPR001005 -
Glsi12g1556 331 SMART sant 95 143 IPR001005 -
Glsi12g1556 331 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
Glsi12g1556 331 FunFam Myb transcription factor 43 95 - -
Glsi12g1556 331 SUPERFAMILY Homeodomain-like 41 137 IPR009057 -
Glsi12g1556 331 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Glsi12g1556 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 90 IPR017930 -
Glsi12g1556 331 CDD SANT 45 90 IPR001005 -
Glsi12g1556 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1556 Glsi-ChrGlsi12 32465753 32467230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1556 38 175 MYB Transcription Factor Family AT1G68320 76.087 8.87e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi12g1556 Myb_DNA-binding 6.3e-15 CL0123