LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1552	ATGAGATTTCTGTCTAGTTTATGCTCCTGCTTGCAGAAGAGGCTGAAGGGCCGTAGATCCTGTGTCTCCAGACCCGACGAACAAGCCGACGATGGCTCCGACTCTTGGGACCTCTTCTTCGACCTCCGCGCTCTTCAACTAGCCACCGCTTCCTTCTCCGAGTTAAACAAGTTGGGTCATGGAGGGTTTGGTCCTGTGTACAAGGGGTTGATGCCTAATGGTCAAGAAGTAGCTGTTAAGATGCTGTCAGTAGATTCAAGACAAGGTATTAGAGAATTTACCAATGAAGTCAAACTATTACTAAAAATTCAGCACAAGAACTTGGTTACGCTACTGGGGTGTTGTGCAGAAGGACCTGAAAAGATGCTTGTTTATGAGTATCTGCCAAACAAAAGCCTTGACCACTTTCTATTTGATAAAAAGAAATCTTCATCTTTGGACTGGGCAACACGATTTAGAATAGTTGCAGGAGTGGCTAGAGGACTGCTCTACCTGCATGAAGAGGCCCCAGAAAGAATTATTCATAGAGACATCAAAGCTAGTAACATATTACTGGATGGAAATTTAAATCCAAAAATTTCAGATTTTGGCTTAGCGAGGCTGTTTCCCGGGGAGGACACTCATTTGCAGACATTTAGGATTTCTGGTACACATGGTTACATGGCCCCTGAATATGCATTCCGTGGATATTTATCTGTGAAGACAGATGTTTTCAGTTATGGAATCTTGGTGTTAGAAATTGTTAGCGGGAGAAAAAACCATGACGAGCAGCTTGGAGGAGAAAAGGCAGATCTTTTAGGCTATGCATGGAAACTATACGAGTTAGGGAAGGTTATGGATTTAATTGACCCAACCCTTGCTAAATACAATGGTGATGAGGTAGCAATGTGCATTCAGCTGGGTTTGTTGTGCTGTCAAGCAAGTATAGCAGAGAGACCTGATATGAGTTCTGTTAATCTCATGCTATCAAGTGACTCATTTACTTTGCCCAGACCAGGTAAACCAGGAATTCAAGGCCGTGGAGGACGTTGGACTACTACTACTTCTGCTTTCACCAATACCAATGCTAGTACTGGAACCAAGACTTCTGGAGGTACTAGCTTGGTAGAGGATTTTTCTAGAAATTCTATCTCTACTTCTTCTTTTGATGAAGGCAGATGA	1161	0.4298	MRFLSSLCSCLQKRLKGRRSCVSRPDEQADDGSDSWDLFFDLRALQLATASFSELNKLGHGGFGPVYKGLMPNGQEVAVKMLSVDSRQGIREFTNEVKLLLKIQHKNLVTLLGCCAEGPEKMLVYEYLPNKSLDHFLFDKKKSSSLDWATRFRIVAGVARGLLYLHEEAPERIIHRDIKASNILLDGNLNPKISDFGLARLFPGEDTHLQTFRISGTHGYMAPEYAFRGYLSVKTDVFSYGILVLEIVSGRKNHDEQLGGEKADLLGYAWKLYELGKVMDLIDPTLAKYNGDEVAMCIQLGLLCCQASIAERPDMSSVNLMLSSDSFTLPRPGKPGIQGRGGRWTTTTSAFTNTNASTGTKTSGGTSLVEDFSRNSISTSSFDEGR	386

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1552	386	FunFam	Cysteine-rich receptor-like protein kinase 41	128	328	-	-
	Glsi12g1552	386	ProSiteProfiles	Protein kinase domain profile.	52	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g1552	386	FunFam	Cysteine-rich receptor-like protein kinase 2	19	127	-	-
	Glsi12g1552	386	CDD	STKc_IRAK	58	322	-	-
	Glsi12g1552	386	Gene3D	Transferase(Phosphotransferase) domain 1	128	328	-	-
	Glsi12g1552	386	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	7	375	-	-
	Glsi12g1552	386	MobiDBLite	consensus disorder prediction	331	369	-	-
	Glsi12g1552	386	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	173	185	IPR008271	GO:0004672\|GO:0006468
	Glsi12g1552	386	Gene3D	Phosphorylase Kinase; domain 1	21	127	-	-
	Glsi12g1552	386	SMART	serkin_6	52	327	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g1552	386	SUPERFAMILY	Protein kinase-like (PK-like)	37	322	IPR011009	-
	Glsi12g1552	386	MobiDBLite	consensus disorder prediction	341	369	-	-
	Glsi12g1552	386	Pfam	Protein tyrosine and serine/threonine kinase	55	255	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g1552	Glsi-ChrGlsi12	32445624	32449777	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1552	3	351	Receptor kinase-like Gene Family	AT4G23140	48.626	4.68e-112	340

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Glsi12g1552		PK_Tyr_Ser-Thr	3e-46	CL0016